PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022148422.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 787aa    MW: 88928.1 Da    PI: 5.5709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022148422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.15.7e-1064107841373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs++d + a++lL +++++++  gd  qR+a++f++AL+ar+++++++     ++ ++s+ + ++ l+a+++    +P+ k+s 
  XP_022148422.1 410 LRNLLILCAQAVSTDDRRIAHELLRQIRQHSTTIGDGSQRMAHFFANALEARMVGTGTGSKMYYETLAQSKISAADMLKAYQVHLSSCPFKKLSL 504
                     6899***************************************************6655555556666666679********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   +++l+ +e+++ +HiiDf+i +G+ Wp L+q L++ p+gpp+lRiTg+++p++g   +e++ etg+rLak++e+++vpf+++ ++++++e+
  XP_022148422.1 505 FFMIKMVLKVAEKAKSLHIIDFGICYGFLWPMLIQFLSQLPDGPPKLRITGIDHPQPGfrPAEKIDETGRRLAKYCERFKVPFQYQGIASHNWET 599
                     ***************************************************************************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++++ ++l+V++ ++ ++llde+v+ +s+rd vL+l+++++P+++v++    ++ ++ F +rf eal ++sal+d+l+++lpreseer+
  XP_022148422.1 600 IRIEDLKLNSSDVLVVHSFYRFKNLLDETVEESSPRDVVLRLIRKMNPNIFVHSVVSGSYHAPFFITRFREALFHFSALYDALDVNLPRESEERM 694
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++Ere+lgr+i+nvvaceg er+er et+++W+ r ++aGFk++pl+++++++ ++ l   + + + +++++g++++gWk+r ++  ++W
  XP_022148422.1 695 MIEREFLGRQIMNVVACEGVERVERPETYKQWHVRCMRAGFKQLPLDQEIMNKFRCKLTCNYHKDFVLDQDDGWMLQGWKGRIVYGSCCW 784
                     ***********************************************************999888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    
MDPNFNGFPD RRVDYQTPLA QLNDPPNYLT DGFRVNDRTS LPTSYLYPEL EKSFEFNEPS  60
LDLFPFVGNS LFPYESDPNN FSSGSSERRE GESFSRSVRL SSDGGGPGVS SGFSPGGDSS  120
SDESDFRETV LNYISQMLME ENLEEKPCMF YDPLGLKDTE KSFYDALGKN YPPSPNQPPL  180
DCESSEDACH GNDSDHAGSV SIGTSNSPDP QWVVDPGEYK PSILPTSFPV SSYQSNFELS  240
SGSQNNLTIN SHQLVTELLA QNIFSDSTSI LQYKKGLEEA SKFLPGVSQL NIDLGSGLLT  300
GVASKVMDTT ATVKDRRENS PNGSKGRKNH ERGDVDLDLQ EGRRNKQAAV YVDEEELSDM  360
FDKVLLYDCG NETSANGGCE KLQSTVQLHG SIAGKARERK QEKRKDSVDL RNLLILCAQA  420
VSTDDRRIAH ELLRQIRQHS TTIGDGSQRM AHFFANALEA RMVGTGTGSK MYYETLAQSK  480
ISAADMLKAY QVHLSSCPFK KLSLFFMIKM VLKVAEKAKS LHIIDFGICY GFLWPMLIQF  540
LSQLPDGPPK LRITGIDHPQ PGFRPAEKID ETGRRLAKYC ERFKVPFQYQ GIASHNWETI  600
RIEDLKLNSS DVLVVHSFYR FKNLLDETVE ESSPRDVVLR LIRKMNPNIF VHSVVSGSYH  660
APFFITRFRE ALFHFSALYD ALDVNLPRES EERMMIEREF LGRQIMNVVA CEGVERVERP  720
ETYKQWHVRC MRAGFKQLPL DQEIMNKFRC KLTCNYHKDF VLDQDDGWML QGWKGRIVYG  780
SCCWVPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein