PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022148087.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 436aa MW: 47909.9 Da PI: 8.7902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022148087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	88	108	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_022148087.1 88 CEICNKGFQRDQNLQLHRRGH 108 *******************88 PP
2	zf-C2H2	13	0.00031	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022148087.1 163 WKCDKCSKRYAVQSDWKAHSKTC 185 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MIKGLLFQQE EVVQAMEENL SNLTSASGEA SACSGNRADQ LPANYSGQYF SAPPPPKKKR 60 NLPGNPDPDA EVIALSPKAL LATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRANK 120 EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSSSPPNP ILLMANQNPP 240 PLISHLNTFQ NHPHFTPLDH IPSFPLKKEP PLQNSSNFIP PWLDDHHHQN NNNSNNGVPT 300 STSLHLPSPH MSATALLQKA AQMGATMSSN SNNPPADQSI TSCNFGLHLS SSTATAAAAA 360 AALPPYRNSF CEDAFGGISR AAAAAEDGNL STRDFLGLRA ISHSEFLNNI AAYSNCINVA 420 QTTTNSQTQI QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MIKGLLFQQE EVVQAMEENL SNLTSASGEA SACSGNRADQ LPANYSGQYF SAPPPPKKKR  60
NLPGNPDPDA EVIALSPKAL LATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRANK  120
EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSSSPPNP ILLMANQNPP  240
PLISHLNTFQ NHPHFTPLDH IPSFPLKKEP PLQNSSNFIP PWLDDHHHQN NNNSNNGVPT  300
STSLHLPSPH MSATALLQKA AQMGATMSSN SNNPPADQSI TSCNFGLHLS SSTATAAAAA  360
AALPPYRNSF CEDAFGGISR AAAAAEDGNL STRDFLGLRA ISHSEFLNNI AAYSNCINVA  420
QTTTNSQTQI QKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	126	KLKQRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-137	C2H2 family protein