PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022146643.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 281aa    MW: 32832.2 Da    PI: 6.5869
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022146643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.5e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gk +ey+s
  XP_022146643.1  9 KRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS 59
                    79***********************************************96 PP
2K-box60.37.6e-219017812100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + e+l  +++k++ke+e+Lq  + ++ GedL+ ++l++L ++ ++L++sl+++R++K+el+ +q+++l++kek l++en+++ ++++e
  XP_022146643.1  90 PDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEKILEDENEQIYHMIKE 178
                     56688999***************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MGRGKIAIKR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIGLIVFSS NGKCFEYCSQ  60
PTCMDQIIKR YQISLAGSRA PDRLHDGNDP DPEELASQIR KMRKETEELQ VRLQRYTGED  120
LSAIQLRDLD EMDHRLQNSL NRVRARKSEL FQQQMDNLKR KEKILEDENE QIYHMIKEQQ  180
MAAAMMQKSE EEQMMSSHVD MNQQHQQMHD FIPFPLHPQL QLQVQVQQAD QDHEADEPSS  240
VLQLAPLQPP PSPFHPFRLQ LQPIQPNLQD FNLHSSTTTY E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-53MIKC_MADS family protein