PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022146538.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 908aa    MW: 100716 Da    PI: 6.6648
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022146538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022146538.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022146538.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp1218.7e-40253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_022146538.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    
MRLSTAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNKE  60
VDAHIPSYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSAQEQKEP YLAAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFHGLKED DMGLNSQLMW LRGDGLDRGI QPLNFHGLGV  420
APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQN PSLPNRPATF  480
MPSQMLQQPH PQPQQTFLQS DHENQHLSVS QAQTQTSVLQ QEIKHQTFNN HHQQPPPPPQ  540
QQPQPQQQVF DHQQVPTTMS SMSQFGSASQ SQAQSLQSIP PLCRQQSFSD SNANHVTSPM  600
ISPLHSLLGS FPQDESSQLL NLPRTNPMMH SSTWPSKRAA VDPLLSSGNS QFVLPQGENM  660
GTTQTTNISQ NAISLAPFPG RECSLDQGNG DPQSNLLFGV NIEPSSLLLQ NGMPNLRGIC  720
SDSDSTAIPF SSNYVNPAGT NFSANPAGTP SNCIEDSGFL QSPENTGQVN PPTRTFVKVY  780
KSGSFGRSLD ISKFSSYHQL RSELAHMFSL EGELEDPLRS GWQLVFVDRE NDVLLLGDDP  840
WPEFVNSVWC IKILSPQEVQ EMGKRGLELL NSVPIQRLSN GSCDNYANRQ ESSRNLSTGI  900
TSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein