PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022145217.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 496aa MW: 54771 Da PI: 5.6529

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022145217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	5e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_022145217.1 12 VPCDFCNEQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51 67***************************99545555556 PP
2	zf-B_box	23.7	9.6e-08	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++++++++ C +++ lC++C H + H++ p XP_022145217.1 54 SQICDNCSSEPVSVRCSTDNLVLCQECDWDAHGScsvsvaHDRAP 98 689*************************99994488888887766 PP
3	CCT	60	7.8e-21	448	492	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeKrktR+++K irYesRKa+A++R+Rv+GrFvk++e XP_022145217.1 448 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVNGRFVKASE 492 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MVCSKSRTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC 60 SSEPVSVRCS TDNLVLCQEC DWDAHGSCSV SVAHDRAPIE GFSGCPSALE LVSLWGFDLG 120 DKKLEESEML VQNWGCSQDL VMPVDSWACR ATATAFHDLI VPNENAFLFA NLSCTDAAPM 180 VKRQSPSCGK HKQVIYKQLV ELLKRDFEGG EEGDNHEDNN GDGDAGGEDV GMENLVPETG 240 NGVCYWQENL EARRIEKGDD GVFVDAAPQQ PLPQQTSFTS LLTMPPHMGL KDSERVVDGT 300 GGWDTNPNRQ NIQIWDFHLG RLRGHKDSNS FEDAYGTENM GFTIKNFGEF LKETSPSSPK 360 LGGETYQINC SSTHEDMPSF NSNVNNATLS QGAATCESDN LPNGTAYSKL KGGSKNAQPM 420 EQSVLIRGDG IRSASTTKAN LELLAQNRGN AMQRYKEKRK TRRYDKYIRY ESRKARADTR 480 KRVNGRFVKA SEAPVS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MVCSKSRTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
SSEPVSVRCS TDNLVLCQEC DWDAHGSCSV SVAHDRAPIE GFSGCPSALE LVSLWGFDLG  120
DKKLEESEML VQNWGCSQDL VMPVDSWACR ATATAFHDLI VPNENAFLFA NLSCTDAAPM  180
VKRQSPSCGK HKQVIYKQLV ELLKRDFEGG EEGDNHEDNN GDGDAGGEDV GMENLVPETG  240
NGVCYWQENL EARRIEKGDD GVFVDAAPQQ PLPQQTSFTS LLTMPPHMGL KDSERVVDGT  300
GGWDTNPNRQ NIQIWDFHLG RLRGHKDSNS FEDAYGTENM GFTIKNFGEF LKETSPSSPK  360
LGGETYQINC SSTHEDMPSF NSNVNNATLS QGAATCESDN LPNGTAYSKL KGGSKNAQPM  420
EQSVLIRGDG IRSASTTKAN LELLAQNRGN AMQRYKEKRK TRRYDKYIRY ESRKARADTR  480
KRVNGRFVKA SEAPVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-109	CO-like family protein