PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022144615.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

Trihelix

Protein Properties

Length: 496aa MW: 56295.8 Da PI: 6.8512

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022144615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.5	4.4e-29	90	175	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+ ++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_022144615.1 90 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 175 8***********************************889*************************97..66678*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MDMEDQYGLS DLRHLMTAPP ARSHFPGHHD LSAAAAAYRN LHPNSNPYDL IMMMPRDPLP 60 DFRSDHSASA TAAGFEGETG CLAGDSGTGR WPRQETLTLL EIRSRLDSKF KEANQKGPLW 120 DEVSRIMAEE HNYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKNYRFF RQLEALYGET 180 SNATSLPDSH FLGDNNLRFQ QNGTTNNPIA TAPMSHEAPH SLSLSNTSEF ETSASSDELG 240 SIGVMDNDSV EKRRKRRGXK CWKAKIKQFI DSQMRKLIDK QEAWLEKLMK TLEQKEKERM 300 IREEEWRRQE VSRIDRERSF WAKERAWIEA RDAALMEALQ KLTGREIGEY DNNSSPDHRL 360 MAVEHRQNNS ENQNEDGSEI LNNSTARELQ DNNYQRKIID QGNKKRKETS RSATTTTTYN 420 LYFQNDSSLY GGGGGSGAYG SEMKEQSPNS SNAGGGGSGH VVQDSCFRFL MGEGDQSQSG 480 LWENFGLKLN NGGDQT

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MDMEDQYGLS DLRHLMTAPP ARSHFPGHHD LSAAAAAYRN LHPNSNPYDL IMMMPRDPLP  60
DFRSDHSASA TAAGFEGETG CLAGDSGTGR WPRQETLTLL EIRSRLDSKF KEANQKGPLW  120
DEVSRIMAEE HNYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKNYRFF RQLEALYGET  180
SNATSLPDSH FLGDNNLRFQ QNGTTNNPIA TAPMSHEAPH SLSLSNTSEF ETSASSDELG  240
SIGVMDNDSV EKRRKRRGXK CWKAKIKQFI DSQMRKLIDK QEAWLEKLMK TLEQKEKERM  300
IREEEWRRQE VSRIDRERSF WAKERAWIEA RDAALMEALQ KLTGREIGEY DNNSSPDHRL  360
MAVEHRQNNS ENQNEDGSEI LNNSTARELQ DNNYQRKIID QGNKKRKETS RSATTTTTYN  420
LYFQNDSSLY GGGGGSGAYG SEMKEQSPNS SNAGGGGSGH VVQDSCFRFL MGEGDQSQSG  480
LWENFGLKLN NGGDQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	280	KRRKRRGXKCWKAKIKQFIDSQMRKLIDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	7e-96	Trihelix family protein