PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022143834.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 699aa MW: 76808.4 Da PI: 6.8769

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022143834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_022143834.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 210 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022143834.1 211 NGDLCVGIRRA 221 8999**997 PP
2	Auxin_resp	112.8	3.3e-37	287	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe+vY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+ +v+ +dpvrW++S+Wr+L+ XP_022143834.1 287 AATLAANGQTFEIVYYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTINSVQVADPVRWSESPWRLLQ 370 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MITFMDSKEK VKEMEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACAPVDFRNC 60 PKVPPYTLCR VSAIKFLADP DTDEVFAKVR LTPVNGSELD FEDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGLE TSCGWNPAGG 240 NCTVPCGAFS AFLREDENRL TRSANGLNGN GSLMGKGKVK PESVIEAATL AANGQTFEIV 300 YYPRASTPEF CVKAALVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI NSVQVADPVR 360 WSESPWRLLQ VTWDEPDLLQ NVKRVSXWLV ELVSNMSPIH LAPFSPPRKK FRYPQHPDFP 420 LDNQPSMPSF SSYLHGPGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHLS KLQSGLFPVG 480 YRSLDPAAGS TRLSGNAMTE KPSMSENVSC LLTMAHSTTQ ASKKFDGIKT PQLILFGRPI 540 LTELQMSQSC SGDTVSPVGT GNSSSDGNGD KMANFSDGSG SALHQQGVAE RSSCENFQWY 600 KDNRQEVEPN LDTGHCKVFM ESEDVGRTLD LSSLGSYEEL YRKLGNMFGI DNSETLNHIL 660 YRDVSGAVKH VGDEQFSEFI KTARRLTILT DSGSNNVGA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MITFMDSKEK VKEMEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACAPVDFRNC  60
PKVPPYTLCR VSAIKFLADP DTDEVFAKVR LTPVNGSELD FEDDGIGRLN GSEQDKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGLE TSCGWNPAGG  240
NCTVPCGAFS AFLREDENRL TRSANGLNGN GSLMGKGKVK PESVIEAATL AANGQTFEIV  300
YYPRASTPEF CVKAALVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI NSVQVADPVR  360
WSESPWRLLQ VTWDEPDLLQ NVKRVSXWLV ELVSNMSPIH LAPFSPPRKK FRYPQHPDFP  420
LDNQPSMPSF SSYLHGPGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHLS KLQSGLFPVG  480
YRSLDPAAGS TRLSGNAMTE KPSMSENVSC LLTMAHSTTQ ASKKFDGIKT PQLILFGRPI  540
LTELQMSQSC SGDTVSPVGT GNSSSDGNGD KMANFSDGSG SALHQQGVAE RSSCENFQWY  600
KDNRQEVEPN LDTGHCKVFM ESEDVGRTLD LSSLGSYEEL YRKLGNMFGI DNSETLNHIL  660
YRDVSGAVKH VGDEQFSEFI KTARRLTILT DSGSNNVGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein