PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022143732.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 471aa MW: 51539.4 Da PI: 9.5736

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022143732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_022143732.1 79 FICEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.2	0.00055	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_022143732.1 155 WKCDKCSKKYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MMSGIDFCAV PSSVGELQSS QLYLPPNPNP NPNPNPNPNS DSQLLPSLPK KKRNLPGKPD 60 PDAEVIALSP NTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKEVKKKVY 120 ICPEKSCVHH DAARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR 180 EYKCDCGTLF SRKDSFITHR AFCDALAEES ARLISSVAAA NLKPNFSGNN SMNNSHHFGL 240 PNPNPNPNPN PNSNSNSQGS SFQLGQGVFV VGSENFDHFN NNNNNLLPTE PPSLSGFPFP 300 TQIPSSNNLF EIPNRILGFT NKNGSKRHTN NQEAKEDGYF SSSFFGGGGG GLSATALLLK 360 AAQLGSTRSD PLSFSGSSVG VMMSSSSSAS NNNNNNSKND NNQSRSELQQ LFEGSINGGL 420 TRDFLGSTGD DHHKQIVPQM VPLMDLTKFA NSNMNSDPIG STQFIANDRT R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MMSGIDFCAV PSSVGELQSS QLYLPPNPNP NPNPNPNPNS DSQLLPSLPK KKRNLPGKPD  60
PDAEVIALSP NTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKEVKKKVY  120
ICPEKSCVHH DAARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR  180
EYKCDCGTLF SRKDSFITHR AFCDALAEES ARLISSVAAA NLKPNFSGNN SMNNSHHFGL  240
PNPNPNPNPN PNSNSNSQGS SFQLGQGVFV VGSENFDHFN NNNNNLLPTE PPSLSGFPFP  300
TQIPSSNNLF EIPNRILGFT NKNGSKRHTN NQEAKEDGYF SSSFFGGGGG GLSATALLLK  360
AAQLGSTRSD PLSFSGSSVG VMMSSSSSAS NNNNNNSKND NNQSRSELQQ LFEGSINGGL  420
TRDFLGSTGD DHHKQIVPQM VPLMDLTKFA NSNMNSDPIG STQFIANDRT R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein