PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022142064.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26498.9 Da    PI: 10.1011
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022142064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-311766150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_022142064.1 17 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
                    79***********************************************8 PP
2K-box115.54.9e-38851814100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sLs+k+L++Le++Lek++++iRskKnell+++ie+++k+e +l+++n+ Lr+k+
  XP_022142064.1  85 SNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKI 179
                     3444499***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_022142064.1 180 AE 181
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSDSPQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG  60
RLYEYANNSV KATIDRYKKA SSDSSNTGST SEANTQFYQQ EAAKLRVQIG NLQNSNRNML  120
GESLSSLSVK DLKSLESKLE KGISRIRSKK NELLFAEIEY MRKREIDLHN NNQLLRAKIA  180
ESERNASMIG GDFELMQSHP YDPRDFFQVN GLQHNNNHQY PRQDNMALQL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-97MIKC_MADS family protein