PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022141112.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

Protein Properties

Length: 370aa MW: 42300.9 Da PI: 9.7618

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022141112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.2	9.4e-11	31	121	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f + ps+ + l +pk+f+ +g++ s ++ ++g +W+v l +k g++++ +GW++F + ++ g +vF++ g+s+f v + XP_022141112.1 31 FRIIFPSSIRD-KKLEMPKNFVMMFGQE--LSSNALITVPNGGVWQVGL--EKANGQIWFCDGWSKFIDYYSIDCGFLLVFRYGGHSTF--QVLI 118 55555555555.559*****777644..666888899******..******************************998999..9999 PP E-S CS B3 97 frk 99 f++ XP_022141112.1 119 FDT 121 986 PP
2	B3	48.2	2e-15	274	360	5	92
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +++ + ++ +++p +f +++ ++k e + l+ +gr+We+++ y ++ + +++GW+eF ++n+L++gD++vF+l++r + l XP_022141112.1 274 IMQKRNIEKTYVYIPSSFSNKYLSSKDE--IIELQAgFEGRKWEIYC-YGTGRTSKRMGRGWREFSRENNLRAGDVIVFELVERsRINVL 360 456777788889********555444..577777699****.7555566789********************9987444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MANHASEGRR SGLRRRNLPS PARTNRPSHF FRIIFPSSIR DKKLEMPKNF VMMFGQELSS 60 NALITVPNGG VWQVGLEKAN GQIWFCDGWS KFIDYYSIDC GFLLVFRYGG HSTFQVLIFD 120 TTTSEIQYPH DDGMDLGDAV QISGDSVAPI SSSCGYSDRH IEDGSSYREH APKKTSCSSR 180 LENDVSENSL ESYDVGTRKK SKRKLEILSC GIKRKSKRCK VEEHDKVEDF DVKKNDSRQK 240 LPSQTRIKTS DGQEMAIRAA TKKLKTKNPS FMVIMQKRNI EKTYVYIPSS FSNKYLSSKD 300 EIIELQAGFE GRKWEIYCYG TGRTSKRMGR GWREFSRENN LRAGDVIVFE LVERSRINVL 360 DFTVFSSAEK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MANHASEGRR SGLRRRNLPS PARTNRPSHF FRIIFPSSIR DKKLEMPKNF VMMFGQELSS  60
NALITVPNGG VWQVGLEKAN GQIWFCDGWS KFIDYYSIDC GFLLVFRYGG HSTFQVLIFD  120
TTTSEIQYPH DDGMDLGDAV QISGDSVAPI SSSCGYSDRH IEDGSSYREH APKKTSCSSR  180
LENDVSENSL ESYDVGTRKK SKRKLEILSC GIKRKSKRCK VEEHDKVEDF DVKKNDSRQK  240
LPSQTRIKTS DGQEMAIRAA TKKLKTKNPS FMVIMQKRNI EKTYVYIPSS FSNKYLSSKD  300
EIIELQAGFE GRKWEIYCYG TGRTSKRMGR GWREFSRENN LRAGDVIVFE LVERSRINVL  360
DFTVFSSAEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	205	RKKSKRKL
2	198	215	RKKSKRKLEILSCGIKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-50	B3 family protein