PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022140595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | ARF | ||||||||
Protein Properties | Length: 754aa MW: 83783.6 Da PI: 7.9546 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 170 | 271 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022140595.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfptldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGE 260 99****************************9887775..458************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022140595.1 261 NGELRLGIRRA 271 9999****996 PP | |||||||
2 | Auxin_resp | 119.8 | 2.1e-39 | 296 | 377 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++F+++++k++k+++++v++G+Rfkm+fe++ds+err+sG+v+ + d+dp+rWpnSkWr+L XP_022140595.1 296 VVKAISTKSMFDVFYNPRAYHAQFIISCQKYVKSINNPVIIGTRFKMRFEMDDSPERRFSGVVIEIGDMDPFRWPNSKWRCL 377 6899*****************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence |
MEIDLNQTAS EVGKNAYCNG NCDEGRCNCC LSSSTSSCSS NSSSTPVSSS TYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQIASSASP FSPMEMRPFD LHPQILCKVT NVQLLANKEN 120 DEVYTQLTLL PLPELLGTDL GGKTLEELAL NGADGDGSGG SPTRSTPHMF CKTLTASDTS 180 THGGFSVPRR AAEDCFPTLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS 240 IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLACVVKAI 300 STKSMFDVFY NPRAYHAQFI ISCQKYVKSI NNPVIIGTRF KMRFEMDDSP ERRFSGVVIE 360 IGDMDPFRWP NSKWRCLMVQ WDKDSDHQER VSPWEIDPSV ALPHLSVQSS PRLKKLRTSL 420 QAPPNNPFTG RGGFMDFEDS IRSSKVLQGQ ENVGLVSPFY GRDTAKCSLE FEVRSSAQQN 480 QASGGVEKLN IGDYVKVHTN SSFTGFMESD RFLKVLQGQE ICSLRPPTRK AEYSLGVWGK 540 LNLSDNSFNT FQPPNSGFYH MASNGAQNMY FPRSEIYSTG PAPMMRSNDS HFPRESALFN 600 PSAVDASIIR TKMERANRSV NRESVHLVSA PPTLGSNMRS SKDENANEKN TTGCKLFGFS 660 LTSETATNLQ SSGKRSCTKV HKQGSLVGRA IDLSRLNGYT DLLSELERLF SMEGLLKDPD 720 KGWRVLYTDI ENDVMVVGDY PWHKIYMIKL CSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |