PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140544.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 667aa MW: 73755.5 Da PI: 8.4131

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	113	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ++ XP_022140544.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--SK 203 89**************************997556555..8********************************************4..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022140544.1 204 NGDLCVGIRRA 214 8888**996 PP
2	Auxin_resp	115.1	6.2e-38	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_022140544.1 281 AAALAAGGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 364 56788999**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MKEAEKNLDP QLWHACAGGM VQMPAVNSKV FYFPQGHAEH AQATVDFTSS LRIPALIPCR 60 VVAVKFLADH ETDEVFAIIR LLPLANNDLN NFDEDGAFGS NGSDNNMEKP ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LVAGDSIVFL RSKNGDLCVG IRRAKRAIGS AAESPYGWNP GGGNCIPPYG 240 GLTMFLREEE SKLSRKGCLS SSGGGNLRGK ERVRPESVIE AAALAAGGQA FEVVYYPRAS 300 TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW 360 RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDGQFP 420 FSSFSSNTLR PSSPMCCLSD NTSAGIQGAR HTQFGISLSD FHLNNKLQLG LVPSSFQQLD 480 FHSRSSNRSV KDHRDSSSQN SPVLLTGENT GPKLERSDSV KKHQFLLFGQ PILTEQQITC 540 SSSGDIRSPQ TEKSSLNVNL ERVKFLSDGS GSTFKQQISP NKSPGAGFPW YHGYQATELG 600 LDIGHCKVFM ESEDVGRTLN LSVIGSYEEL YRRLANMFGM EKPDILSHVL YQDATGALKQ 660 AGDKPFS

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MKEAEKNLDP QLWHACAGGM VQMPAVNSKV FYFPQGHAEH AQATVDFTSS LRIPALIPCR  60
VVAVKFLADH ETDEVFAIIR LLPLANNDLN NFDEDGAFGS NGSDNNMEKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RSKNGDLCVG IRRAKRAIGS AAESPYGWNP GGGNCIPPYG  240
GLTMFLREEE SKLSRKGCLS SSGGGNLRGK ERVRPESVIE AAALAAGGQA FEVVYYPRAS  300
TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDGQFP  420
FSSFSSNTLR PSSPMCCLSD NTSAGIQGAR HTQFGISLSD FHLNNKLQLG LVPSSFQQLD  480
FHSRSSNRSV KDHRDSSSQN SPVLLTGENT GPKLERSDSV KKHQFLLFGQ PILTEQQITC  540
SSSGDIRSPQ TEKSSLNVNL ERVKFLSDGS GSTFKQQISP NKSPGAGFPW YHGYQATELG  600
LDIGHCKVFM ESEDVGRTLN LSVIGSYEEL YRRLANMFGM EKPDILSHVL YQDATGALKQ  660
AGDKPFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein