PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022140129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 176aa MW: 20141.2 Da PI: 5.9427 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ s rqvtfskRrng++KKA+ L +LC+ e+a+++fs+ gk + + XP_022140129.1 10 MVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSF 57 67899**************************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MGRRKIEMKM VKDRSSRQVT FSKRRNGLFK KANDLATLCG LEIAIVVFSP GGKAFSFGHP 60 NVEDVIDRYL NHESEPIPPA REAGMIEKEN EELLDLIKQL QLEKRRGEIL EKEMKSKEES 120 IKIEDLNFDE LLKLKESLEK LRENVKIKAS ELEASSSLLL LANEPVMEAD RSDTKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-35 | M-type_MADS family protein |