PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137874.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

SBP

Protein Properties

Length: 674aa MW: 75771 Da PI: 7.7767

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.2	1.7e-36	10	85	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_022137874.1 10 RCQVPGCEVDIRELKGYHRRHRVCLRCANATAVMLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 85 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
TARVSAGTVR CQVPGCEVDI RELKGYHRRH RVCLRCANAT AVMLDGETKR YCQQCGKFHV 60 LSDFDEGKRS CRRKLERHNN RRRRKPIDSI AAIESDGAGV HLEDVSCDGD VGKENIFFNN 120 QTDQKEVVHL DSEDGLVAST VCSAPDLPNN MDSGLTFVPM GETQLDGVKD NSKSLASSYC 180 ENKSTYSSMC PTGRISFKLY DWNPAEFPRR LRLQIFEWLA SMPVELEGYI RPGCIILTAF 240 VAMPNFMWIK LLEDPATHVH NFVVARGRPL WGSGNMFVYL NNMIFHAVEG GSVMKLKMDV 300 QAPRLHYVHP TCFEAGKPME FVACGSHLRQ PKFRSLVSFS GKYLAHDHSF VSPHCHNEGD 360 AKCSDHQLFK IYIPHTECNL FGPAFVEVEN QSGLSNFIPI LIGDRETCSE MKIIQERLDM 420 SLLLEATGSS QEFCESSSLK QKVYSELMTD ISWVLKKPTP EPLQHILNSS QIQRFTRLLK 480 FLICNDSCVI LGRVLEHLKI VMENVETNGA VNGFSYPELS FFEKYLDYAR DVLRLNLRKT 540 GNPVLNLGYL KPKGDYDSQS GSENKLVSVV PSIGLKTEAR ESGHFQAVAG SSTSIGNVET 600 VPLLNEKLGD RMMVQQHSRK PCGLLFSGTL FRRQTTLFAV TFITVCFGIC AAFLHSHKVG 660 EFAITIRRCL IDKF

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

TARVSAGTVR CQVPGCEVDI RELKGYHRRH RVCLRCANAT AVMLDGETKR YCQQCGKFHV  60
LSDFDEGKRS CRRKLERHNN RRRRKPIDSI AAIESDGAGV HLEDVSCDGD VGKENIFFNN  120
QTDQKEVVHL DSEDGLVAST VCSAPDLPNN MDSGLTFVPM GETQLDGVKD NSKSLASSYC  180
ENKSTYSSMC PTGRISFKLY DWNPAEFPRR LRLQIFEWLA SMPVELEGYI RPGCIILTAF  240
VAMPNFMWIK LLEDPATHVH NFVVARGRPL WGSGNMFVYL NNMIFHAVEG GSVMKLKMDV  300
QAPRLHYVHP TCFEAGKPME FVACGSHLRQ PKFRSLVSFS GKYLAHDHSF VSPHCHNEGD  360
AKCSDHQLFK IYIPHTECNL FGPAFVEVEN QSGLSNFIPI LIGDRETCSE MKIIQERLDM  420
SLLLEATGSS QEFCESSSLK QKVYSELMTD ISWVLKKPTP EPLQHILNSS QIQRFTRLLK  480
FLICNDSCVI LGRVLEHLKI VMENVETNGA VNGFSYPELS FFEKYLDYAR DVLRLNLRKT  540
GNPVLNLGYL KPKGDYDSQS GSENKLVSVV PSIGLKTEAR ESGHFQAVAG SSTSIGNVET  600
VPLLNEKLGD RMMVQQHSRK PCGLLFSGTL FRRQTTLFAV TFITVCFGIC AAFLHSHKVG  660
EFAITIRRCL IDKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	84	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	1e-179	SBP family protein