PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022136672.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family AP2
Protein Properties Length: 523aa    MW: 58485.1 Da    PI: 8.8584
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022136672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16188247155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_022136672.1 188 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 247
                     78*******************988886678446*************************98 PP
2AP2513.6e-16290341155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_022136672.1 290 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 341
                     57****************988532...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
LSVMPLKSDG SLCVMEAISR SQPREMMPNL PPKLEDFLGG ATHGREATAL SLDSIYYNQN  60
AEAESEREHS LNLFKQQHVY LQSQRYYSEM FHFPAEETSK ESHIAGYCSE IRQAMEQQID  120
GSFGGMTCQD LQPLSLSMSP GSQSSCVTAP SQISHSGPAT LETKKRGPAG QKQPVHRKSI  180
DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQVYLGGYDM EEKAARAYDL  240
AALKYWGPST HLNFSLRNYH VEIEEMKNMN RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ  300
HGRWQARIGR VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR GVNAVTNFDT SRYNIERIMA  360
SSGLLSGEFA RRNKDLKPTN AIEHKEPTQN ITRINLSEIS NSNNIDWRTV FHXTLLLDPN  420
ASIESLDQKS MASGIALQHL IGVETVNCDR AMGNDSSKLK AHFSNGSSVV SSLSSSRETS  480
PDKSNSSSSV LFGKAPFESN GGIWLPSNQM RPVPISLPVW NDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-143AP2 family protein