PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135174.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HB-PHD

Protein Properties

Length: 679aa MW: 77528 Da PI: 9.3327

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.6	6.7e-11	469	513	10	54
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +e L ++F+ n ps++ +e L+k+lgL+ ++V WF+N R+ XP_022135174.1 469 YAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVNKWFKNARYS 513 67899**************************************85 PP
2	PHD	35.9	1.8e-12	202	257	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_022135174.1 202 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 257 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MRGAGRKLIH KESGKCSHSK LEAGSELILS PKLKRCSKIY HSKQKKPRTK SHAQPTGSTY 60 KRRPLPKALS KGNKNVTIRQ LAEKVEQVAK KNQQRKRRKN KRKREKLELD EASRLQRRSR 120 YLMIKMKLEQ NLIDAYSGEG WKGHSREKIK PEKELQRAMK QILKCKLGIR DALRQLHLLG 180 SVGCIEDSVI GPDGSVYHEH IFCAKCKLRE AFPDNDIILC DGTCNCAFHQ KCLDPPLDTE 240 NIPPGDQGWF CKFCECKMEI LEGMNAHLGT RFSLNIRWED VFKEEAAFPD GGNALLNHEE 300 DWPSDDSEDD DYNPDKKENG NEKLSGEEND THLLEESSSS TSLSWSLDGE DLTDRDGIAC 360 EDHFGVGTSI VSDGSIEEGI VCGRRQRQAV DYKKLYSEMF GKDAPAQEQV SEDEDWGPAK 420 RKRREKECDA ASTLMSLCES EKKSQDIDME ADKKLPNSKS RSFFRIPRYA VEKLRQVFAD 480 NELPSRDVKE NLSKELGLDA EKVNKWFKNA RYSALRTRKA EGATQSHSFS KTSTEFRLAD 540 SKENAGNHLT TEDTSIKELQ LKSRNGLYKK KQHRRSSLVS FNSNKDALDF GDDISLKNLL 600 KNRKTKVRKK VNFVGRSKGG GQEAEVELER LCKIKDRLEI MKQKILRLSN KKDDGTLDRL 660 HMFEQSIIYV PVAVLKEKV

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MRGAGRKLIH KESGKCSHSK LEAGSELILS PKLKRCSKIY HSKQKKPRTK SHAQPTGSTY  60
KRRPLPKALS KGNKNVTIRQ LAEKVEQVAK KNQQRKRRKN KRKREKLELD EASRLQRRSR  120
YLMIKMKLEQ NLIDAYSGEG WKGHSREKIK PEKELQRAMK QILKCKLGIR DALRQLHLLG  180
SVGCIEDSVI GPDGSVYHEH IFCAKCKLRE AFPDNDIILC DGTCNCAFHQ KCLDPPLDTE  240
NIPPGDQGWF CKFCECKMEI LEGMNAHLGT RFSLNIRWED VFKEEAAFPD GGNALLNHEE  300
DWPSDDSEDD DYNPDKKENG NEKLSGEEND THLLEESSSS TSLSWSLDGE DLTDRDGIAC  360
EDHFGVGTSI VSDGSIEEGI VCGRRQRQAV DYKKLYSEMF GKDAPAQEQV SEDEDWGPAK  420
RKRREKECDA ASTLMSLCES EKKSQDIDME ADKKLPNSKS RSFFRIPRYA VEKLRQVFAD  480
NELPSRDVKE NLSKELGLDA EKVNKWFKNA RYSALRTRKA EGATQSHSFS KTSTEFRLAD  540
SKENAGNHLT TEDTSIKELQ LKSRNGLYKK KQHRRSSLVS FNSNKDALDF GDDISLKNLL  600
KNRKTKVRKK VNFVGRSKGG GQEAEVELER LCKIKDRLEI MKQKILRLSN KKDDGTLDRL  660
HMFEQSIIYV PVAVLKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	RRKNKRK
2	98	105	RKNKRKRE
3	100	107	NKRKREKL
4	101	127	KRKREKLELDEASRLQRRSRYLMIKMK
5	421	426	RKRREK
6	602	609	NRKTKVRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-157	HB-PHD family protein