PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135173.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HB-PHD

Protein Properties

Length: 716aa MW: 81519.7 Da PI: 9.7014

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.5	7.2e-11	506	550	10	54
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +e L ++F+ n ps++ +e L+k+lgL+ ++V WF+N R+ XP_022135173.1 506 YAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVNKWFKNARYS 550 67899**************************************85 PP
2	PHD	35.8	1.9e-12	239	294	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_022135173.1 239 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 294 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MRGAGRKLIH KESGKCSHSK LEAGSELILS PKLKRCSKIY HSKQKKPRTK SHAQPTGSTY 60 KRRPLPKALS KGNKNVTIRQ LAGKKFLLKK LDTKSSKDLF LSRLQGGKSL SSTNLKGNAE 120 KVEQVAKKNQ QRKRRKNKRK REKLELDEAS RLQRRSRYLM IKMKLEQNLI DAYSGEGWKG 180 HSREKIKPEK ELQRAMKQIL KCKLGIRDAL RQLHLLGSVG CIEDSVIGPD GSVYHEHIFC 240 AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG 300 MNAHLGTRFS LNIRWEDVFK EEAAFPDGGN ALLNHEEDWP SDDSEDDDYN PDKKENGNEK 360 LSGEENDTHL LEESSSSTSL SWSLDGEDLT DRDGIACEDH FGVGTSIVSD GSIEEGIVCG 420 RRQRQAVDYK KLYSEMFGKD APAQEQVSED EDWGPAKRKR REKECDAAST LMSLCESEKK 480 SQDIDMEADK KLPNSKSRSF FRIPRYAVEK LRQVFADNEL PSRDVKENLS KELGLDAEKV 540 NKWFKNARYS ALRTRKAEGA TQSHSFSKTS TEFRLADSKE NAGNHLTTED TSIKELQLKS 600 RNGLYKKKQH RRSSLVSFNS NKDALDFGDD ISLKNLLKNR KTKVRKKVNF VGRSKGGGQE 660 AEVELERLCK IKDRLEIMKQ KILRLSNKKD DGTLDRLHMF EQSIIYVPVA VLKEKV

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MRGAGRKLIH KESGKCSHSK LEAGSELILS PKLKRCSKIY HSKQKKPRTK SHAQPTGSTY  60
KRRPLPKALS KGNKNVTIRQ LAGKKFLLKK LDTKSSKDLF LSRLQGGKSL SSTNLKGNAE  120
KVEQVAKKNQ QRKRRKNKRK REKLELDEAS RLQRRSRYLM IKMKLEQNLI DAYSGEGWKG  180
HSREKIKPEK ELQRAMKQIL KCKLGIRDAL RQLHLLGSVG CIEDSVIGPD GSVYHEHIFC  240
AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG  300
MNAHLGTRFS LNIRWEDVFK EEAAFPDGGN ALLNHEEDWP SDDSEDDDYN PDKKENGNEK  360
LSGEENDTHL LEESSSSTSL SWSLDGEDLT DRDGIACEDH FGVGTSIVSD GSIEEGIVCG  420
RRQRQAVDYK KLYSEMFGKD APAQEQVSED EDWGPAKRKR REKECDAAST LMSLCESEKK  480
SQDIDMEADK KLPNSKSRSF FRIPRYAVEK LRQVFADNEL PSRDVKENLS KELGLDAEKV  540
NKWFKNARYS ALRTRKAEGA TQSHSFSKTS TEFRLADSKE NAGNHLTTED TSIKELQLKS  600
RNGLYKKKQH RRSSLVSFNS NKDALDFGDD ISLKNLLKNR KTKVRKKVNF VGRSKGGGQE  660
AEVELERLCK IKDRLEIMKQ KILRLSNKKD DGTLDRLHMF EQSIIYVPVA VLKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	RRKNKRK
2	135	142	RKNKRKRE
3	137	144	NKRKREKL
4	138	164	KRKREKLELDEASRLQRRSRYLMIKMK
5	458	463	RKRREK
6	639	646	NRKTKVRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-157	HB-PHD family protein