PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022135116.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MYB
Protein Properties Length: 946aa    MW: 106896 Da    PI: 6.8229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022135116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09395449146
                      TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqk 46 
                      r++W+t Ed+ l+  ++q G +          +W +Ia+t+  gR + qc +rw k
   XP_022135116.1 395 RNPWSTSEDKNLLLTIQQKGLNnwiniavslgDWQAIASTLE-GRAGTQCSNRWKK 449
                      79****************************************.***********98 PP
2Myb_DNA-binding36.79.9e-12458503147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ed +l+ av ++G+++W++ a+ ++ gR   qc++rw++ 
   XP_022135116.1 458 RGAFTPDEDNRLKIAVLLFGPKNWNKKAEFVP-GRNQVQCRERWFNC 503
                      89******************************.***********996 PP
3Myb_DNA-binding47.73.7e-15511554247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT+eEd++l  a++++G   W+++a++++  Rt+++c+ rw k+
   XP_022135116.1 511 CEWTEEEDLRLEIAIQEHGYS-WTKVAACVP-SRTDNECRRRWKKL 554
                      57*****************99.*********.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    
MSRRSHNEGG DQELSTGEED DEDDVFDEDM EALRRACRLV GANPEEYNNP PLSPTAGAGS  60
FGGSKPGSDS DDVDDLELVR NIRNRFSIAA DDEDQALSLH PLSTLPPVSP DEEEDDFETL  120
RAIQRRFSAY ESDALSNNLD QSCDFGGPLE MDSNETDVGR QTSSGRSSML ALEKGNLPKA  180
ALAFIDAIKK NRSQQKFIRS KMIHLEARIE ENKKLRQRFK ILKDFQSSCR RRTGYQLSQM  240
IDPRVQLISA QKPQTKDSSK KDKQLSAMYY GPAENSHVAC YRMALTKFPL SVNRKKWSNV  300
ERENLGKGIR QQFQEMVLQI SMDQISSGLQ GFSADSDDLD NIFASIKDLD ITPERIREFL  360
PKVNWDKLAS FYLGGRSGAE CEARWLNFED PLINRNPWST SEDKNLLLTI QQKGLNNWIN  420
IAVSLGDWQA IASTLEGRAG TQCSNRWKKS LDPARTKRGA FTPDEDNRLK IAVLLFGPKN  480
WNKKAEFVPG RNQVQCRERW FNCLDPSLRK CEWTEEEDLR LEIAIQEHGY SWTKVAACVP  540
SRTDNECRRR WKKLFPNEVP LLQEARRIQK AALISNFVDR ESERPALGPT DFRPIPNTNL  600
LCNADDPNPA PKRNVKPRTR VPRKEKNATG DAPKRRKSNN HSNQANGATE QVSKKPQRRQ  660
NRNGAYTAKR KGVLEPRPNN EKCAEQNLET ESLEVQLNSS VSGRTNSECP EIVYENGMEE  720
CENKVAEKLS KSDLFFXEQE EXQNSTGSSG VSVLSEMMND MDEYNPSILP DTAPLACTTG  780
DDDITERKDT RVADTDLVDS NSFSLPHGCL GLRTNDSEGV DSCSVGETTD KSDMVYKHQG  840
RRRRTNQPKK ELERSANKEL HPHNQPKKRK HNSTYTSESG TLEPVEEADD CTLQGFLQKK  900
LKKTTTHKRK FDGGSSDKLE VESNGNDTTI ASFLKNISKK KKHKSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1841870RRRRTNQPKKELERSANKELHPHNQPKKRK
2867903KKRKHNSTYTSESGTLEPVEEADDCTLQGFLQKKLKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-162MYB family protein