PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135115.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 988aa MW: 111714 Da PI: 7.2353

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	394	439	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++W+t Ed+ l+ ++q G ++W Ia +g++Rt+ qc sr+q XP_022135115.1 394 RNPWSTSEDKNLLLTIQQKGLNNWINIAVSLGTNRTPFQCLSRYQR 439 79******************************************96 PP
2	Myb_DNA-binding	41.2	3.7e-13	448	491	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed++l av+ lG g+W +Ia+t+ gR + qc +rw k XP_022135115.1 448 REWTKDEDDKLRSAVAVLGVGDWQAIASTLE-GRAGTQCSNRWKK 491 68***************************.*********98 PP
3	Myb_DNA-binding	36.6	1e-11	500	545	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022135115.1 500 RGAFTPDEDNRLKIAVLLFGPKNWNKKAEFVP-GRNQVQCRERWFNC 545 89****************************.*********996 PP
4	Myb_DNA-binding	47.6	3.9e-15	553	596	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l a++++G W+++a++++ Rt+++c+ rw k+ XP_022135115.1 553 CEWTEEEDLRLEIAIQEHGYS-WTKVAACVP-SRTDNECRRRWKKL 596 57***************99.*****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence
MSRRSHNEGG DQELSTGEED DEDDVFDEDM EALRRACRLV GANPEEYNNP PLSPTAGAGS 60 FGGSKPGSDS DDVDDLELVR NIRNRFSIAA DDEDQALSLH PLSTLPPVSP DEEEDDFETL 120 RAIQRRFSAY ESDALSNNLD QSCDFGGPLE MDSNETDVGR QTSSGRSSML ALEKGNLPKA 180 ALAFIDAIKK NRSQQKFIRS KMIHLEARIE ENKKLRQRFK ILKDFQSSCR RRTGYQLSQM 240 IDPRVQLISA QKPQTKDSSK KDKQLSAMYY GPAENSHVAC YRMALTKFPL SVNRKKWSNV 300 ERENLGKGIR QQFQEMVLQI SMDQISGLQG FSADSDDLDN IFASIKDLDI TPERIREFLP 360 KVNWDKLASF YLGGRSGAEC EARWLNFEDP LINRNPWSTS EDKNLLLTIQ QKGLNNWINI 420 AVSLGTNRTP FQCLSRYQRS LNASILKREW TKDEDDKLRS AVAVLGVGDW QAIASTLEGR 480 AGTQCSNRWK KSLDPARTKR GAFTPDEDNR LKIAVLLFGP KNWNKKAEFV PGRNQVQCRE 540 RWFNCLDPSL RKCEWTEEED LRLEIAIQEH GYSWTKVAAC VPSRTDNECR RRWKKLFPNE 600 VPLLQEARRI QKAALISNFV DRESERPALG PTDFRPIPNT NLLCNADDPN PAPKRNVKPR 660 TRVPRKEKNA TGDAPKRRKS NNHSNQANGA TEQVSKKPQR RQNRNGAYTA KRKGVLEPRP 720 NNEKCAEQNL ETESLEVQLN SSVSGRTNSE CPEIVYENGM EECENKVAEK LSKSDLFFXE 780 QEEXQNSTGS SGVSVLSEMM NDMDEYNPSI LPDTAPLACT TGDDDITERK DTRVADTDLV 840 DSNSFSLPHG CLGLRTNDSE GVDSCSVGET TDKSDMVYKH QGRRRRTNQP KKELERSANK 900 ELHPHNQPKK RKHNSTYTSE SGTLEPVEEA DDCTLQGFLQ KKLKKTTTHK RKFDGGSSDK 960 LEVESNGNDT TIASFLKNIS KKKKHKSS

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence

MSRRSHNEGG DQELSTGEED DEDDVFDEDM EALRRACRLV GANPEEYNNP PLSPTAGAGS  60
FGGSKPGSDS DDVDDLELVR NIRNRFSIAA DDEDQALSLH PLSTLPPVSP DEEEDDFETL  120
RAIQRRFSAY ESDALSNNLD QSCDFGGPLE MDSNETDVGR QTSSGRSSML ALEKGNLPKA  180
ALAFIDAIKK NRSQQKFIRS KMIHLEARIE ENKKLRQRFK ILKDFQSSCR RRTGYQLSQM  240
IDPRVQLISA QKPQTKDSSK KDKQLSAMYY GPAENSHVAC YRMALTKFPL SVNRKKWSNV  300
ERENLGKGIR QQFQEMVLQI SMDQISGLQG FSADSDDLDN IFASIKDLDI TPERIREFLP  360
KVNWDKLASF YLGGRSGAEC EARWLNFEDP LINRNPWSTS EDKNLLLTIQ QKGLNNWINI  420
AVSLGTNRTP FQCLSRYQRS LNASILKREW TKDEDDKLRS AVAVLGVGDW QAIASTLEGR  480
AGTQCSNRWK KSLDPARTKR GAFTPDEDNR LKIAVLLFGP KNWNKKAEFV PGRNQVQCRE  540
RWFNCLDPSL RKCEWTEEED LRLEIAIQEH GYSWTKVAAC VPSRTDNECR RRWKKLFPNE  600
VPLLQEARRI QKAALISNFV DRESERPALG PTDFRPIPNT NLLCNADDPN PAPKRNVKPR  660
TRVPRKEKNA TGDAPKRRKS NNHSNQANGA TEQVSKKPQR RQNRNGAYTA KRKGVLEPRP  720
NNEKCAEQNL ETESLEVQLN SSVSGRTNSE CPEIVYENGM EECENKVAEK LSKSDLFFXE  780
QEEXQNSTGS SGVSVLSEMM NDMDEYNPSI LPDTAPLACT TGDDDITERK DTRVADTDLV  840
DSNSFSLPHG CLGLRTNDSE GVDSCSVGET TDKSDMVYKH QGRRRRTNQP KKELERSANK  900
ELHPHNQPKK RKHNSTYTSE SGTLEPVEEA DDCTLQGFLQ KKLKKTTTHK RKFDGGSSDK  960
LEVESNGNDT TIASFLKNIS KKKKHKSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	883	912	RRRRTNQPKKELERSANKELHPHNQPKKRK
2	909	945	KKRKHNSTYTSESGTLEPVEEADDCTLQGFLQKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein