PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135114.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 989aa MW: 111801 Da PI: 7.2353

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	395	440	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++W+t Ed+ l+ ++q G ++W Ia +g++Rt+ qc sr+q XP_022135114.1 395 RNPWSTSEDKNLLLTIQQKGLNNWINIAVSLGTNRTPFQCLSRYQR 440 79******************************************96 PP
2	Myb_DNA-binding	41.2	3.7e-13	449	492	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed++l av+ lG g+W +Ia+t+ gR + qc +rw k XP_022135114.1 449 REWTKDEDDKLRSAVAVLGVGDWQAIASTLE-GRAGTQCSNRWKK 492 68***************************.*********98 PP
3	Myb_DNA-binding	36.6	1e-11	501	546	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022135114.1 501 RGAFTPDEDNRLKIAVLLFGPKNWNKKAEFVP-GRNQVQCRERWFNC 546 89****************************.*********996 PP
4	Myb_DNA-binding	47.6	3.9e-15	554	597	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l a++++G W+++a++++ Rt+++c+ rw k+ XP_022135114.1 554 CEWTEEEDLRLEIAIQEHGYS-WTKVAACVP-SRTDNECRRRWKKL 597 57***************99.*****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence
MSRRSHNEGG DQELSTGEED DEDDVFDEDM EALRRACRLV GANPEEYNNP PLSPTAGAGS 60 FGGSKPGSDS DDVDDLELVR NIRNRFSIAA DDEDQALSLH PLSTLPPVSP DEEEDDFETL 120 RAIQRRFSAY ESDALSNNLD QSCDFGGPLE MDSNETDVGR QTSSGRSSML ALEKGNLPKA 180 ALAFIDAIKK NRSQQKFIRS KMIHLEARIE ENKKLRQRFK ILKDFQSSCR RRTGYQLSQM 240 IDPRVQLISA QKPQTKDSSK KDKQLSAMYY GPAENSHVAC YRMALTKFPL SVNRKKWSNV 300 ERENLGKGIR QQFQEMVLQI SMDQISSGLQ GFSADSDDLD NIFASIKDLD ITPERIREFL 360 PKVNWDKLAS FYLGGRSGAE CEARWLNFED PLINRNPWST SEDKNLLLTI QQKGLNNWIN 420 IAVSLGTNRT PFQCLSRYQR SLNASILKRE WTKDEDDKLR SAVAVLGVGD WQAIASTLEG 480 RAGTQCSNRW KKSLDPARTK RGAFTPDEDN RLKIAVLLFG PKNWNKKAEF VPGRNQVQCR 540 ERWFNCLDPS LRKCEWTEEE DLRLEIAIQE HGYSWTKVAA CVPSRTDNEC RRRWKKLFPN 600 EVPLLQEARR IQKAALISNF VDRESERPAL GPTDFRPIPN TNLLCNADDP NPAPKRNVKP 660 RTRVPRKEKN ATGDAPKRRK SNNHSNQANG ATEQVSKKPQ RRQNRNGAYT AKRKGVLEPR 720 PNNEKCAEQN LETESLEVQL NSSVSGRTNS ECPEIVYENG MEECENKVAE KLSKSDLFFX 780 EQEEXQNSTG SSGVSVLSEM MNDMDEYNPS ILPDTAPLAC TTGDDDITER KDTRVADTDL 840 VDSNSFSLPH GCLGLRTNDS EGVDSCSVGE TTDKSDMVYK HQGRRRRTNQ PKKELERSAN 900 KELHPHNQPK KRKHNSTYTS ESGTLEPVEE ADDCTLQGFL QKKLKKTTTH KRKFDGGSSD 960 KLEVESNGND TTIASFLKNI SKKKKHKSS

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence

MSRRSHNEGG DQELSTGEED DEDDVFDEDM EALRRACRLV GANPEEYNNP PLSPTAGAGS  60
FGGSKPGSDS DDVDDLELVR NIRNRFSIAA DDEDQALSLH PLSTLPPVSP DEEEDDFETL  120
RAIQRRFSAY ESDALSNNLD QSCDFGGPLE MDSNETDVGR QTSSGRSSML ALEKGNLPKA  180
ALAFIDAIKK NRSQQKFIRS KMIHLEARIE ENKKLRQRFK ILKDFQSSCR RRTGYQLSQM  240
IDPRVQLISA QKPQTKDSSK KDKQLSAMYY GPAENSHVAC YRMALTKFPL SVNRKKWSNV  300
ERENLGKGIR QQFQEMVLQI SMDQISSGLQ GFSADSDDLD NIFASIKDLD ITPERIREFL  360
PKVNWDKLAS FYLGGRSGAE CEARWLNFED PLINRNPWST SEDKNLLLTI QQKGLNNWIN  420
IAVSLGTNRT PFQCLSRYQR SLNASILKRE WTKDEDDKLR SAVAVLGVGD WQAIASTLEG  480
RAGTQCSNRW KKSLDPARTK RGAFTPDEDN RLKIAVLLFG PKNWNKKAEF VPGRNQVQCR  540
ERWFNCLDPS LRKCEWTEEE DLRLEIAIQE HGYSWTKVAA CVPSRTDNEC RRRWKKLFPN  600
EVPLLQEARR IQKAALISNF VDRESERPAL GPTDFRPIPN TNLLCNADDP NPAPKRNVKP  660
RTRVPRKEKN ATGDAPKRRK SNNHSNQANG ATEQVSKKPQ RRQNRNGAYT AKRKGVLEPR  720
PNNEKCAEQN LETESLEVQL NSSVSGRTNS ECPEIVYENG MEECENKVAE KLSKSDLFFX  780
EQEEXQNSTG SSGVSVLSEM MNDMDEYNPS ILPDTAPLAC TTGDDDITER KDTRVADTDL  840
VDSNSFSLPH GCLGLRTNDS EGVDSCSVGE TTDKSDMVYK HQGRRRRTNQ PKKELERSAN  900
KELHPHNQPK KRKHNSTYTS ESGTLEPVEE ADDCTLQGFL QKKLKKTTTH KRKFDGGSSD  960
KLEVESNGND TTIASFLKNI SKKKKHKSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	884	913	RRRRTNQPKKELERSANKELHPHNQPKKRK
2	910	946	KKRKHNSTYTSESGTLEPVEEADDCTLQGFLQKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein