PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134620.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

SBP

Protein Properties

Length: 380aa MW: 42050.7 Da PI: 7.0047

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	6.9e-42	92	168	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_022134620.1 92 CLVDGCISDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQP 168 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MDWNLKTPSW DFAQLEQDAL KNINTTIEAS SSFVEQRTAS GDFSVDLKLG QVGDLGTRYV 60 VNEPGVFKMA PSPSEPSKRA RGSGNGAQPL SCLVDGCISD LSNYRDYHRR HKVCELHSKT 120 PQVTIGGLKQ RFCQQCSRFH SLDEFDEGKR SCRKRLDGHN RRRRKPQPES LSRSILSHYQ 180 GSQLLPFSTS CVYPSTIVMN HSWCGAANTE TNVRLQGQPE PTHFPDKHNI YLGSSSNDSS 240 YKIGKQLPFL QSDNPSEFSV CQPPVKTVAF SENGGDQSKM LYDRFTTPGH ESDCALSLLS 300 SLQTQSSRIG LSQVEQDRNL ISFLHPLDVN LGNHSSLNPV DSVLNGSVSN ADINCSGMFH 360 IASDDGGNEA PTPSLPFHWQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MDWNLKTPSW DFAQLEQDAL KNINTTIEAS SSFVEQRTAS GDFSVDLKLG QVGDLGTRYV  60
VNEPGVFKMA PSPSEPSKRA RGSGNGAQPL SCLVDGCISD LSNYRDYHRR HKVCELHSKT  120
PQVTIGGLKQ RFCQQCSRFH SLDEFDEGKR SCRKRLDGHN RRRRKPQPES LSRSILSHYQ  180
GSQLLPFSTS CVYPSTIVMN HSWCGAANTE TNVRLQGQPE PTHFPDKHNI YLGSSSNDSS  240
YKIGKQLPFL QSDNPSEFSV CQPPVKTVAF SENGGDQSKM LYDRFTTPGH ESDCALSLLS  300
SLQTQSSRIG LSQVEQDRNL ISFLHPLDVN LGNHSSLNPV DSVLNGSVSN ADINCSGMFH  360
IASDDGGNEA PTPSLPFHWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	166	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-62	SBP family protein