PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022133502.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 428aa MW: 47183 Da PI: 8.166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022133502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_022133502.1 78 FICEICNKGFQRDQNLQLHKRGH 100 89******************988 PP
2	zf-C2H2	12.3	0.0005	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ ks+ k H + + XP_022133502.1 155 WKCEKCSKRYAVKSDWKAHSKIC 177 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MMMEGNLMVD ENLSVLTTCA SADQITRNET ATDPLYSHHS SASTNQHPKR KRNLPGNPDP 60 GAEVIALSPK ALLATNRFIC EICNKGFQRD QNLQLHKRGH NLPGKLKQRG NNKEVRKKVY 120 VCPEVTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVKSDW KAHSKICGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAQES STVTSSIMNN NSLFPSFLRP NLFPLIKTEE 240 GKGHPFLISH DQIIPSSNND NSNPTLHFST LENGQHHPLL LQQNPNPNPT NPTSTPIGFG 300 LVGSGLGPLV GSCPAWESSS TTSLAENSSP LPLPPSSFLH HMMSFEEASF EEALNGILMN 360 GVDRDVGKGG GGGGGGSDGE TRDFLGLRAL ASSDHIFQDE INDMSNLNSS SLFGLHQNHQ 420 TQTTFWRH

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MMMEGNLMVD ENLSVLTTCA SADQITRNET ATDPLYSHHS SASTNQHPKR KRNLPGNPDP  60
GAEVIALSPK ALLATNRFIC EICNKGFQRD QNLQLHKRGH NLPGKLKQRG NNKEVRKKVY  120
VCPEVTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVKSDW KAHSKICGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAQES STVTSSIMNN NSLFPSFLRP NLFPLIKTEE  240
GKGHPFLISH DQIIPSSNND NSNPTLHFST LENGQHHPLL LQQNPNPNPT NPTSTPIGFG  300
LVGSGLGPLV GSCPAWESSS TTSLAENSSP LPLPPSSFLH HMMSFEEASF EEALNGILMN  360
GVDRDVGKGG GGGGGGSDGE TRDFLGLRAL ASSDHIFQDE INDMSNLNSS SLFGLHQNHQ  420
TQTTFWRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	118	KLKQRGNNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	C2H2 family protein