PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022133310.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 632aa MW: 69842.7 Da PI: 7.6374

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022133310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	291	350	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022133310.1 291 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 350 78*****************988886678446***********************98 PP
2	AP2	46.9	6.7e-15	393	444	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022133310.1 393 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 444 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MNNVNGNSCN WLGFSVSPNV NMELSSSSAT AVSPSIPANL FHSPSQFNYG ICYGVDGENG 60 GFYSPLSVMP LKSDGSICSM EALTRQHPQE VVSSSTPKLE DFFGGATMGS HHYESNDREV 120 MALSLDSIFC HQNPTHHEPQ TQAFPHFSSL RSREMMVQDS KVIMPDGCNL QQQQHPTVAE 180 SEISGMKNWA APRNYGTNNS SFEQKMVSCM SENGGEPGSI NAMAYGDLQS LSLSMTMSPS 240 SQSSCVTATQ HVSPAMADCS AMDTKKRGHE KMDQKQIVHR KSLDTFGQRT SQYRGVTRHR 300 WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE 360 NYQKELEEMK NMSRQEYVAH LRRRSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL 420 YLGTFSTQEE AAEAYDIAAI KFRGMNAVTN FDITRYDVER IIASNTLLSG DLAKRKQHTE 480 FDNESLRQSP ATPNSNSEAM PLPTSQSIHT QSESDWKMAL YQSSQQLVPK PRLSSGITND 540 GSRIGLEDSA KLGAHFSNAS SMVTSCSLSS SREESPDKTS LSMVFGIPQS TSKPFAAAPA 600 SNMNSSWIAS AQQLRAANCM SQLPVFAGWN NT

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MNNVNGNSCN WLGFSVSPNV NMELSSSSAT AVSPSIPANL FHSPSQFNYG ICYGVDGENG  60
GFYSPLSVMP LKSDGSICSM EALTRQHPQE VVSSSTPKLE DFFGGATMGS HHYESNDREV  120
MALSLDSIFC HQNPTHHEPQ TQAFPHFSSL RSREMMVQDS KVIMPDGCNL QQQQHPTVAE  180
SEISGMKNWA APRNYGTNNS SFEQKMVSCM SENGGEPGSI NAMAYGDLQS LSLSMTMSPS  240
SQSSCVTATQ HVSPAMADCS AMDTKKRGHE KMDQKQIVHR KSLDTFGQRT SQYRGVTRHR  300
WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE  360
NYQKELEEMK NMSRQEYVAH LRRRSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  420
YLGTFSTQEE AAEAYDIAAI KFRGMNAVTN FDITRYDVER IIASNTLLSG DLAKRKQHTE  480
FDNESLRQSP ATPNSNSEAM PLPTSQSIHT QSESDWKMAL YQSSQQLVPK PRLSSGITND  540
GSRIGLEDSA KLGAHFSNAS SMVTSCSLSS SREESPDKTS LSMVFGIPQS TSKPFAAAPA  600
SNMNSSWIAS AQQLRAANCM SQLPVFAGWN NT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-147	AP2 family protein