PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022132845.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 549aa    MW: 61340.1 Da    PI: 6.0887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022132845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.96.5e-1301795492374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+a+++ d + a+ ++  l +++s +gdp qRl ay++e+L+arl rs+s +ykal++ e +   sse +++++++++++P++kf++ 
  XP_022132845.1 179 QDTLITCAQAIHEADINVATLFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCDEPT---SSELMSYMSILFQICPYFKFAYT 270
                     689*****************************************************************9...999******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      aN  I ea+++e  +HiiDf+i qG QW++++q L++Rp+gpp  lRiTgv++++s   +   l+ +g+rL+++Ae+ g+ fef++ +a +  +
  XP_022132845.1 271 SANVVIWEAMANEPIIHIIDFQIAQGSQWIPFIQDLSNRPGGPPvLLRITGVDDSQSAhaRGGGLQIVGRRLSQLAESNGICFEFHA-AAMSGCE 364
                     ****************************************9999789*******9988889999***********************.899999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e ++Lr++pgEalaVn+ ++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+yy+a+f+s++a  pr++++ri
  XP_022132845.1 365 VERSNLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLSRFIETLDYYTAMFESIDAARPRDDKQRI 459
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+++++r+ivn+vaceg+er+erhe l+kWr+rl++aGF+p+p+s++++ +++ llr+++++ y+v+e +g+l+lgWk+r++ + SaWr
  XP_022132845.1 460 RAEQHCVARDIVNMVACEGFERVERHELLGKWRMRLRMAGFSPYPMSSSVTRSVQNLLREFNEN-YKVQEADGALYLGWKNRAMATSSAWR 549
                     **************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MQASQNRQAS SGIHEMYHQS VQEIDPYCLS HFHVLENNVC PDTGSQGNSI NFSSCKKQFF  60
TLESFPATAD LSACNSPSAV SVLSSRSPFS PQVSQSCSSD QHNSFDNTCG SPQSGCSVTD  120
DDNELKHRLK ELEISLLGPE SDIEDSCYCS FRGGAHRDAS VARWNWNKMV EMIPRLNLQD  180
TLITCAQAIH EADINVATLF MDVLGQMVSV SGDPAQRLGA YLLEGLRARL ERSGSAIYKA  240
LKCDEPTSSE LMSYMSILFQ ICPYFKFAYT SANVVIWEAM ANEPIIHIID FQIAQGSQWI  300
PFIQDLSNRP GGPPVLLRIT GVDDSQSAHA RGGGLQIVGR RLSQLAESNG ICFEFHAAAM  360
SGCEVERSNL RIRPGEALAV NFPYALHHMP DESVSTQNHR DRLLRLVKSL SPKVVTIVEQ  420
ESNTNTSPFL SRFIETLDYY TAMFESIDAA RPRDDKQRIR AEQHCVARDI VNMVACEGFE  480
RVERHELLGK WRMRLRMAGF SPYPMSSSVT RSVQNLLREF NENYKVQEAD GALYLGWKNR  540
AMATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein