PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022132257.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 970aa MW: 107033 Da PI: 5.2091

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022132257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia ++ Rt+ qc +rwqk+l XP_022132257.1 37 KGQWTPEEDEILRQAVDHFQGKNWKKIAGCFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	63	6.1e-20	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa+++ gR +kqc++rw+++l XP_022132257.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAKHLS-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.7e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022132257.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence
MEGDKTISSP SDNPGVRDQK IRALHGRTTG PTRRSTKGQW TPEEDEILRQ AVDHFQGKNW 60 KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAKHLS 120 GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLVSGLLT QFQDPISVGQ PNQLPVSVGS GNDSGLNGME TEEISECSQD 240 ATVADSFMSD LACGTLQMRK EYQLIENSGL GKEQSSSPVS SSAPYYHSVD EITEFAQEMG 300 HSLSPSEQNH LHGCRITSDR DYQCDLNEFP NISSLELGKE TSQFEAICTR MGESHGAGDS 360 AQNSSMEKGA TACVQAERMF ISDDECCRVL FSDAKSDRCD RTTNLRKGSY VSELNDYEVP 420 VESLGTQKAD NSHTSTSQIH PSGSDVQEKN LVSQSYVVVP LVTSQQDGLV YNGGPSKPSC 480 FHLTDNSEMQ EHPGVSEDPA KLICVNTIAT AADSTGTCTH SDERAKQHNE HEDSGALCYE 540 PPRFPSLDVP FFSCDLIQSG SEMQEYSPLG IRQLMMSSLN CVTPFRLWDS PSCDASPDAV 600 LKSAAKTFTS TPSILKKRHR ELMSPLSERR IDKKLETAVT SSLSETFSRL DVVFNDGPDK 660 ASTLSLSDQK GTTEDFAEDK ENIYCTIEKR ENKRDDGDES LNVTISENGV PKSHSQDYTK 720 QGNADIEMIW VQSAAEIVPP GVLTEHDAND LQLHSVDQAD SHRALSSSKG IKKRHCLSRL 780 DDPSNAEDNT SKVSSGNSHG RTSSSPPEHH SVATTRELPV TSSASLEKIE DNRPQITITG 840 IAASLPGESP FFKRSIESPS AWMSPWFLNS FLPGPRIDTE ITIEDIGYYS SPKERSVDAI 900 GLMKQVSERT AAACANAHEV LGNETPETLL KGTRMKHHSH CDETVLADCR VLDFSECGSP 960 GKVGSGPIVG

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence

MEGDKTISSP SDNPGVRDQK IRALHGRTTG PTRRSTKGQW TPEEDEILRQ AVDHFQGKNW  60
KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAKHLS  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLVSGLLT QFQDPISVGQ PNQLPVSVGS GNDSGLNGME TEEISECSQD  240
ATVADSFMSD LACGTLQMRK EYQLIENSGL GKEQSSSPVS SSAPYYHSVD EITEFAQEMG  300
HSLSPSEQNH LHGCRITSDR DYQCDLNEFP NISSLELGKE TSQFEAICTR MGESHGAGDS  360
AQNSSMEKGA TACVQAERMF ISDDECCRVL FSDAKSDRCD RTTNLRKGSY VSELNDYEVP  420
VESLGTQKAD NSHTSTSQIH PSGSDVQEKN LVSQSYVVVP LVTSQQDGLV YNGGPSKPSC  480
FHLTDNSEMQ EHPGVSEDPA KLICVNTIAT AADSTGTCTH SDERAKQHNE HEDSGALCYE  540
PPRFPSLDVP FFSCDLIQSG SEMQEYSPLG IRQLMMSSLN CVTPFRLWDS PSCDASPDAV  600
LKSAAKTFTS TPSILKKRHR ELMSPLSERR IDKKLETAVT SSLSETFSRL DVVFNDGPDK  660
ASTLSLSDQK GTTEDFAEDK ENIYCTIEKR ENKRDDGDES LNVTISENGV PKSHSQDYTK  720
QGNADIEMIW VQSAAEIVPP GVLTEHDAND LQLHSVDQAD SHRALSSSKG IKKRHCLSRL  780
DDPSNAEDNT SKVSSGNSHG RTSSSPPEHH SVATTRELPV TSSASLEKIE DNRPQITITG  840
IAASLPGESP FFKRSIESPS AWMSPWFLNS FLPGPRIDTE ITIEDIGYYS SPKERSVDAI  900
GLMKQVSERT AAACANAHEV LGNETPETLL KGTRMKHHSH CDETVLADCR VLDFSECGSP  960
GKVGSGPIVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein