PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW20815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 51442.6 Da PI: 8.2584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.9 | 1.5e-12 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG C yG+rC+F+H+p OIW20815 54 PGEADCMYYLRTGVCGYGSRCRFNHPP 80 57899********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG CkyG++Ck++H++ OIW20815 100 QPVCQYYMRTGSCKYGPSCKYHHPK 124 689********************96 PP | |||||||
3 | zf-CCCH | 35.8 | 1.4e-11 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ OIW20815 145 GEKECSYYVKTGQCKFGSTCKFHHPQ 170 7899********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.3e-12 | 311 | 336 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f++tG+Ck+G++C+++H++ OIW20815 311 DQPECQYFLKTGECKFGPSCRYHHPQ 336 689*********************97 PP | |||||||
5 | zf-CCCH | 33.1 | 9.7e-11 | 358 | 381 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G+ CkF H+ OIW20815 358 AAPCTHYAQRGVCKFGPDCKFDHP 381 589********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence |
MERFARSNEG SRSDPSPEWT GTGAGTGLEG SMWQLGLGGG DGGGGGEESY PLRPGEADCM 60 YYLRTGVCGY GSRCRFNHPP DFGVVIRASR TGEFPERVGQ PVCQYYMRTG SCKYGPSCKY 120 HHPKEGGGTA NPVSLNYYGY PLRPGEKECS YYVKTGQCKF GSTCKFHHPQ PTVVQIPPLP 180 PPVPQVPHLS VPMPSPLYPT VQLPSGPSQQ FGVLVARPPL LSGSFVQSPY GPMVLSPAMV 240 PYSGWDPYQA MATSPVLPSS TPSNVGSAQL YGITQIAPSS AAYTGPYQPS VSSVGPSSSS 300 QKEYSLPERP DQPECQYFLK TGECKFGPSC RYHHPQAMNA LKATVTLSPA GLPLRPGAAP 360 CTHYAQRGVC KFGPDCKFDH PVASLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSEL 420 RPDLTSRSKE PVSFRVSSSL STSTGSVGLT LSTGEPVSQS RTQPSAQSSN PLAAPSTATS 480 GNVSHTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-138 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW20815 |