PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIW20558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 490aa    MW: 53186.3 Da    PI: 7.4034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIW20558genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.4e-09106127426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C+++ + G C++G+rCkF H+
  OIW20558 106 KICNYWVQ-GNCSFGERCKFLHS 127
               79******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MDVDGGNKRV FNRLGGDPRN QKVCYHWQAG KCNRHPCMFL HSEVPPHNSN GAPSKRTYGS  60
AENLSFNGPP RRTSNFNTWG RGGGGRGGSG GRGGGRGGEV VKKAEKICNY WVQGNCSFGE  120
RCKFLHSWSL GDGFSLLTQL DGHKKVVSGI AFPSGSNKLY TGSTDETVRV WDCQSGQCTA  180
VINLGGEVGC MISEGPWVFV GIPNSVKAWN TENLMELSLS GPVGQVYALV VINDMLFAGT  240
QNCKGNEQGT KDDMIGIGSN YVAPYVPHCI CKGLDDATIG GRNLDDVKLA KENACRISLL  300
IDGSILIWKF NLTANCFEPA ASLKGHSHGV VSLVVGANRL YSGSMDNTIR VWSLETLQCL  360
QTLTEHTSVV MSILCWDQFL LSCSLDKTVK VWFATESGNL EVTYTHQEEH GILTLCGMHD  420
SQGKPILVCS CNDNTVHLYD LPSFAERGKI FTKQEVRAIQ IGPGGIFFTG DGTGQVKVWN  480
WIAEPTTSIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-148C3H family protein