PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW20558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 490aa MW: 53186.3 Da PI: 7.4034 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.4e-09 | 106 | 127 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+++ + G C++G+rCkF H+ OIW20558 106 KICNYWVQ-GNCSFGERCKFLHS 127 79******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence |
MDVDGGNKRV FNRLGGDPRN QKVCYHWQAG KCNRHPCMFL HSEVPPHNSN GAPSKRTYGS 60 AENLSFNGPP RRTSNFNTWG RGGGGRGGSG GRGGGRGGEV VKKAEKICNY WVQGNCSFGE 120 RCKFLHSWSL GDGFSLLTQL DGHKKVVSGI AFPSGSNKLY TGSTDETVRV WDCQSGQCTA 180 VINLGGEVGC MISEGPWVFV GIPNSVKAWN TENLMELSLS GPVGQVYALV VINDMLFAGT 240 QNCKGNEQGT KDDMIGIGSN YVAPYVPHCI CKGLDDATIG GRNLDDVKLA KENACRISLL 300 IDGSILIWKF NLTANCFEPA ASLKGHSHGV VSLVVGANRL YSGSMDNTIR VWSLETLQCL 360 QTLTEHTSVV MSILCWDQFL LSCSLDKTVK VWFATESGNL EVTYTHQEEH GILTLCGMHD 420 SQGKPILVCS CNDNTVHLYD LPSFAERGKI FTKQEVRAIQ IGPGGIFFTG DGTGQVKVWN 480 WIAEPTTSIQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-148 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW20558 |