PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW19584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 463aa MW: 49037.7 Da PI: 8.3581 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.8 | 1e-09 | 27 | 53 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+++G+C y +rC+F+H++ OIW19584 27 PGEADCIYFLKNGFCGYASRCRFNHPR 53 57899********************96 PP | |||||||
2 | zf-CCCH | 31.2 | 3.7e-10 | 79 | 98 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C++++rtG Ck+G++Ck++H OIW19584 79 CQYYMRTGSCKFGSSCKYHH 98 ******************** PP | |||||||
3 | zf-CCCH | 33.9 | 5.4e-11 | 122 | 146 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G +CkF+H++ OIW19584 122 EKECSYYVKTGQCKFGTTCKFHHPQ 146 689********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 285 | 309 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG Ck+G++C+++H+ OIW19584 285 DQPECQYYLKTGDCKFGPSCRYHHP 309 689*********************8 PP | |||||||
5 | zf-CCCH | 28.3 | 2.9e-09 | 333 | 356 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G+ CkF H++ OIW19584 333 SVCTHYTQHGVCKFGPACKFDHPM 356 68********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence |
MERYGRSSDE GYQESSWQGS GSYPQRPGEA DCIYFLKNGF CGYASRCRFN HPRDRARVVT 60 GAARSGSGEH PERVGQHVCQ YYMRTGSCKF GSSCKYHHTR QEAGIAAPVS LNYYGYPLRT 120 GEKECSYYVK TGQCKFGTTC KFHHPQPVGV QITAPPPVPP LSPMPVPSPL YPNVQPPSGS 180 SSQQYGVVVA RPPLLSGSLV QGPYGPIVVS PTMVPFSGWG PYQDPATSPV FPSTTLSNVG 240 STQFYGIMQL PSPQTAYAGP YQPSGSLIGP SGSSQKENSL PERPDQPECQ YYLKTGDCKF 300 GPSCRYHHPA DMSASKANVI LSPMGLPLRP GASVCTHYTQ HGVCKFGPAC KFDHPMGSLS 360 YSPSASSLAD MPVAPYPVGS SFGALAPSSS SSELRPELVS GSSNEPASSR MSSSMSTSTG 420 SVGLTSSTGG PISHSGTQPS VQNSSSLATI DATNSTTVSY TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-118 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW19584 |