PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW18927

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 708aa MW: 79378.6 Da PI: 5.8879

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW18927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	118	140	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp OIW18927 118 VPCIFFQK-GLCLKGDRCAFLHGP 140 59****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MVAQSQSQHQ IQTPTLSSHD EALKRNTDCV YFLASPLTCK KGNECEYRHS EYARVNPRDC 60 WYWLNGNCLN PKCSFRHPPL DGLLGTPPAT AAGPSVPPLQ HPTPSATHAP YNSSKPAVPC 120 IFFQKGLCLK GDRCAFLHGP IPNAGNKAVT QAPVNSQGAE PQSFKKTFGG IEKNNTQDRK 180 ISQGNVAKPV GGFEAKPAQK VGTAPQKKIF ELKKHVPPPS TGFEDEVSEF EIISTPQVTD 240 EPTIVMSSRL HQAYVPDDNG FHNGKDNDEF LRESSPGFDV LVADELRNSD YYHGEDEFGN 300 TRGQDERNLD SLSEYDLGHS ADYNLAADIG RDRFRVHQGY DSYDHTQETY MWEQHRKPSA 360 HLERTHRRSD SPNNAEVSDL RLHLSKRRKS NGLKSVVAQD CARESHGEEH SHRHFPRKDS 420 LQLPSNESSI SNRFRGRIKL PGNGGDGRPE RESDRRVGSR LSSGRLPAPH HGMLQDRIRG 480 RVQDGERRNF RDRPVGRELT GDRTNGFYVP KRLSEHKNGR SSENRDQQFL GKRKGLRDNQ 540 QSDDGFQFEG PKPLSEILKE KKRGVGVGAA PPSGNSSENN NTEMTDNSDH KSLTKTQNGS 600 LSETMENVKN HEEGSKSQAI DAVGKNAVNT DTTHGQSSEK EPIYDEAMED QEYEGDDQRD 660 DGDYDYDQVD EGYYEYEQVE EGENPDQEEY IDDEDGDDFA KKIGVMLT

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MVAQSQSQHQ IQTPTLSSHD EALKRNTDCV YFLASPLTCK KGNECEYRHS EYARVNPRDC  60
WYWLNGNCLN PKCSFRHPPL DGLLGTPPAT AAGPSVPPLQ HPTPSATHAP YNSSKPAVPC  120
IFFQKGLCLK GDRCAFLHGP IPNAGNKAVT QAPVNSQGAE PQSFKKTFGG IEKNNTQDRK  180
ISQGNVAKPV GGFEAKPAQK VGTAPQKKIF ELKKHVPPPS TGFEDEVSEF EIISTPQVTD  240
EPTIVMSSRL HQAYVPDDNG FHNGKDNDEF LRESSPGFDV LVADELRNSD YYHGEDEFGN  300
TRGQDERNLD SLSEYDLGHS ADYNLAADIG RDRFRVHQGY DSYDHTQETY MWEQHRKPSA  360
HLERTHRRSD SPNNAEVSDL RLHLSKRRKS NGLKSVVAQD CARESHGEEH SHRHFPRKDS  420
LQLPSNESSI SNRFRGRIKL PGNGGDGRPE RESDRRVGSR LSSGRLPAPH HGMLQDRIRG  480
RVQDGERRNF RDRPVGRELT GDRTNGFYVP KRLSEHKNGR SSENRDQQFL GKRKGLRDNQ  540
QSDDGFQFEG PKPLSEILKE KKRGVGVGAA PPSGNSSENN NTEMTDNSDH KSLTKTQNGS  600
LSETMENVKN HEEGSKSQAI DAVGKNAVNT DTTHGQSSEK EPIYDEAMED QEYEGDDQRD  660
DGDYDYDQVD EGYYEYEQVE EGENPDQEEY IDDEDGDDFA KKIGVMLT

Link Out ? help Back to Top
Ensembl	OIW18927