PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW18300

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 518aa MW: 57178.7 Da PI: 4.667

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW18300	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.5	1.4e-10	181	203	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ OIW18300 181 EDCAYYMKTGSCKFGFNCKFNHP 203 89********************8 PP
2	zf-CCCH	26.8	8.9e-09	227	249	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G Ck++H OIW18300 227 QTECKYYLRSGGCKFGKACKYNH 249 679******************** PP
3	zf-CCCH	42.9	8e-14	272	296	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++CkF+H+ OIW18300 272 GERECPYYMRTGSCKYGATCKFNHP 296 5799********************9 PP
4	zf-CCCH	29.3	1.5e-09	405	431	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ OIW18300 405 PGEPECSYFLKTGDCKFKSNCKFHHPK 431 5799*********************96 PP
5	zf-CCCH	34.8	2.8e-11	453	476	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++r+G+Ck+G+ C+F H+ OIW18300 453 QNICSHYSRYGICKFGPACRFDHP 476 679********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MEHSESDSAL VSNGSSVTDP QFDSQLAPSS LHSHHDRDPE PSDLSHVTQV EEDALGAELE 60 TKLDLKGEGE VGAETVDKVS NFGDGEHVCD EGEGGRGDDD GVVEVEESVK VNVNDGFGGN 120 IRGWDCNSWD EDVNEGVNVN EGFNEYEVGG DDYVVNDGDW AQVEEKIRGR TQHYPLRPDA 180 EDCAYYMKTG SCKFGFNCKF NHPIRTRNQS FKDKAAERED STERSGQTEC KYYLRSGGCK 240 FGKACKYNHT RGKYSAAPVS ELNFLGLPIR LGERECPYYM RTGSCKYGAT CKFNHPDPTT 300 IGGPDSPSGY GNEGSISLQG VSKPSVSSWS PPRTLNETPF VPMLSPSQGV SPRSSDWNGY 360 QAPMYLSDWS MHPPSAYVMS NPAIETNVYM QHQKQMPVDD FPERPGEPEC SYFLKTGDCK 420 FKSNCKFHHP KNRTARLPPC ILSDKGLPLR PDQNICSHYS RYGICKFGPA CRFDHPIDLQ 480 STVIPAFDEQ SYTNSPNVEV AGMGGSADAS DVTIQQYV

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MEHSESDSAL VSNGSSVTDP QFDSQLAPSS LHSHHDRDPE PSDLSHVTQV EEDALGAELE  60
TKLDLKGEGE VGAETVDKVS NFGDGEHVCD EGEGGRGDDD GVVEVEESVK VNVNDGFGGN  120
IRGWDCNSWD EDVNEGVNVN EGFNEYEVGG DDYVVNDGDW AQVEEKIRGR TQHYPLRPDA  180
EDCAYYMKTG SCKFGFNCKF NHPIRTRNQS FKDKAAERED STERSGQTEC KYYLRSGGCK  240
FGKACKYNHT RGKYSAAPVS ELNFLGLPIR LGERECPYYM RTGSCKYGAT CKFNHPDPTT  300
IGGPDSPSGY GNEGSISLQG VSKPSVSSWS PPRTLNETPF VPMLSPSQGV SPRSSDWNGY  360
QAPMYLSDWS MHPPSAYVMS NPAIETNVYM QHQKQMPVDD FPERPGEPEC SYFLKTGDCK  420
FKSNCKFHHP KNRTARLPPC ILSDKGLPLR PDQNICSHYS RYGICKFGPA CRFDHPIDLQ  480
STVIPAFDEQ SYTNSPNVEV AGMGGSADAS DVTIQQYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-129	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW18300