PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIW17414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 419aa    MW: 45335.3 Da    PI: 8.9321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIW17414genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-104972427
              ---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
              ++C +++rtG+C yG+rC+++H++
  OIW17414 49 PNCVYYMRTGFCGYGGRCRYNHPR 72
              78********************96 PP

2zf-CCCH40.83.8e-1393117327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               +++C+++++tGtCk+G++CkF+H++
  OIW17414  93 EPPCQYYLKTGTCKFGASCKFHHPK 117
               79*********************96 PP

3zf-CCCH36.86.4e-12138163227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               ++++C+++++tG+Ck+G +CkF+H++
  OIW17414 138 GEKECSYYLKTGQCKFGITCKFHHPQ 163
               7899********************97 PP

4zf-CCCH38.22.5e-12294320127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C++f+rtG Ck+G  C+F+H++
  OIW17414 294 PGEPECQYFLRTGDCKFGLACRFNHPR 320
               5799*********************96 PP

5zf-CCCH28.92e-09339363226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               +  +C f++++  Ck+G+ CkF H+
  OIW17414 339 GVQPCAFYLQNNNCKFGSACKFDHP 363
               6789********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MELYNRNPSR TGSNQIEWHS PGTKTGLEES MWQLKLSSVD SYPERVGAPN CVYYMRTGFC  60
GYGGRCRYNH PRDRAAVAAA VRATGEYPER VGEPPCQYYL KTGTCKFGAS CKFHHPKHGG  120
GSLSQAPLNI YGCPLRPGEK ECSYYLKTGQ CKFGITCKFH HPQPADTSLP ASAPQFYQQA  180
QSPTVPLPDQ YGGASTSLRV ARPPILPGSY IQGAYGPVLL SPGVVPFPGW SPYSAPVSPV  240
LSPGAQPAVG ATSLYGVTQL NSSTSAFARP YTPLPSSSGP SGSNQKEQVF PERPGEPECQ  300
YFLRTGDCKF GLACRFNHPR DRVVAQPLLN PIGLPLRPGV QPCAFYLQNN NCKFGSACKF  360
DHPWGPVRYS TSTSSLIDMP VTTYPVGSLL STLAPSLTSS ALRPESLSGS KLESFTTRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.10.0C3H family protein