PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW17414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 45335.3 Da PI: 8.9321 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.6 | 2.8e-10 | 49 | 72 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+++H++ OIW17414 49 PNCVYYMRTGFCGYGGRCRYNHPR 72 78********************96 PP | |||||||
2 | zf-CCCH | 40.8 | 3.8e-13 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OIW17414 93 EPPCQYYLKTGTCKFGASCKFHHPK 117 79*********************96 PP | |||||||
3 | zf-CCCH | 36.8 | 6.4e-12 | 138 | 163 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ OIW17414 138 GEKECSYYLKTGQCKFGITCKFHHPQ 163 7899********************97 PP | |||||||
4 | zf-CCCH | 38.2 | 2.5e-12 | 294 | 320 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck+G C+F+H++ OIW17414 294 PGEPECQYFLRTGDCKFGLACRFNHPR 320 5799*********************96 PP | |||||||
5 | zf-CCCH | 28.9 | 2e-09 | 339 | 363 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++ Ck+G+ CkF H+ OIW17414 339 GVQPCAFYLQNNNCKFGSACKFDHP 363 6789********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MELYNRNPSR TGSNQIEWHS PGTKTGLEES MWQLKLSSVD SYPERVGAPN CVYYMRTGFC 60 GYGGRCRYNH PRDRAAVAAA VRATGEYPER VGEPPCQYYL KTGTCKFGAS CKFHHPKHGG 120 GSLSQAPLNI YGCPLRPGEK ECSYYLKTGQ CKFGITCKFH HPQPADTSLP ASAPQFYQQA 180 QSPTVPLPDQ YGGASTSLRV ARPPILPGSY IQGAYGPVLL SPGVVPFPGW SPYSAPVSPV 240 LSPGAQPAVG ATSLYGVTQL NSSTSAFARP YTPLPSSSGP SGSNQKEQVF PERPGEPECQ 300 YFLRTGDCKF GLACRFNHPR DRVVAQPLLN PIGLPLRPGV QPCAFYLQNN NCKFGSACKF 360 DHPWGPVRYS TSTSSLIDMP VTTYPVGSLL STLAPSLTSS ALRPESLSGS KLESFTTRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW17414 |