PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW16645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25564.2 Da PI: 8.5894 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.9 | 1.7e-15 | 28 | 72 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +e + + vtfsk + g++ K ELS+LC+ae a+ii s++gkly OIW16645 28 VEHNNKDDVTFSKHKLGLFNKVTELSILCQAETALIISSQQGKLY 72 67778899************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MESSSKAKIG TKPTTTKGRK RKFEIKNVEH NNKDDVTFSK HKLGLFNKVT ELSILCQAET 60 ALIISSQQGK LYVCGCPDPD AVIRRILNDG SLVQSCHAGK KTHQELVETM NLEYEATHDR 120 LKEEKKSLAE IQETRKGRLD FPPWWNQDIE KMGLEDLEHF TASLETLKLN LVATLEAKKL 180 NSQRLMYSNL PPVNGCFSGD RQVWNLMNGC SSSRNPMVPN LGFGHY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-21 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW16645 |