PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW16230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 44650.5 Da PI: 7.4123 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 7.9e-09 | 54 | 79 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+y ++C+++H+ OIW16230 54 PGEPDCLYYLRTGMCSYRGNCRYNHP 79 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 102 | 126 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ OIW16230 102 EPDCEYFLKTGTCKYGSTCKYHHPK 126 789********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.4e-12 | 149 | 171 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ OIW16230 149 SCPYYMRTGSCKFGLACKFHHPQ 171 6********************97 PP | |||||||
4 | zf-CCCH | 30.5 | 6.2e-10 | 280 | 304 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+ tG CkyG CkF+H++ OIW16230 280 QPECKYFMSTGSCKYGFDCKFHHPK 304 689********************96 PP | |||||||
5 | zf-CCCH | 33.2 | 8.9e-11 | 321 | 346 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ OIW16230 321 PGHAICSYYRLYGICKFGPTCKFDHP 346 5789*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MPENREPLRN AASNHSGDNI EGGLDFYEAI GRLKINGNRD IDAAAQSTPL PERPGEPDCL 60 YYLRTGMCSY RGNCRYNHPA NVLLLDFQGT HYGEELPERI GEPDCEYFLK TGTCKYGSTC 120 KYHHPKDRKG AAPISFNSLG LPMRQEEKSC PYYMRTGSCK FGLACKFHHP QIGVSPVAGS 180 PTSAILPASG LPYVGGFSGW QLPRMSYLSG QGIQCYVPPF LSSPQGIIPA QNWNTYMGST 240 SSTMSTAFLG SNFVYDSINL GGSLLGGQII SPTLPERLDQ PECKYFMSTG SCKYGFDCKF 300 HHPKERIAQS FMNPLGLPVR PGHAICSYYR LYGICKFGPT CKFDHPVLTT PQNYGMTTSP 360 TSPVIDTSLI SSPMGLSTVQ LAETSPSKLS TTDKLQHSDT KAAEDSSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-101 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW16230 |