PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW16195

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 669aa MW: 73915.2 Da PI: 7.13

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW16195	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	255	275	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg OIW16195 255 PCPEFRK-GTCQKGDSCEYAHG 275 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MCCASKSKLS TSNQVMESES QKILLELSAF DDVEAFKREV EEQGLDVNEE CFWYGRRIGS 60 KKMGYEKRTP LMIASLFGST RVVKYIVEIG MVDVNTACGS DRVTALHCAV AGGSESSLEI 120 VKLLLDAGAD ADCVDAIGNK PVSLIAPAFN LSANSRRKAM ELFLRGGEGN QILYEMEQVP 180 SEKKEGADKK EYPVDISLPD INNGVYGTDD FRMYSFKVKL CSRAYSHDWT ECPFVHPGEN 240 ARRRDPQKYP YSCVPCPEFR KGTCQKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCNRK 300 VCFFAHKPEE LRPVYASTGS AMPSPKSYSA GAFDMTSMSP LSLSSSLPMP TVSTPPMSPL 360 AASSSAKSGN LWQNKINFTP PSLQLPGSRL KAALSARDLD LEMEMLGIGS PSYARQQQQQ 420 QQQQQQQLVD EITRISSPSF RSRMGDLNPT NLDELLASAD ASILSQLHGL SVQPSTPTQL 480 QTQNSLQMRQ NMNHLRASYP SNNMPSSPVY KSSPYGFDSS AAVAAAMMNS RSAAFAKRSQ 540 SFIDRGAATN HPGMSSPSNP SCRVSSALSD WGSPTGKLDW GVNGDELSKL RKSASFGFRN 600 NGVSSPKAQT EHVEPDVSWV HSLVRDERSE RFGAEKQHQH QHQQYDLSKE ILPPWVEQLY 660 IEQQKQMVA

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MCCASKSKLS TSNQVMESES QKILLELSAF DDVEAFKREV EEQGLDVNEE CFWYGRRIGS  60
KKMGYEKRTP LMIASLFGST RVVKYIVEIG MVDVNTACGS DRVTALHCAV AGGSESSLEI  120
VKLLLDAGAD ADCVDAIGNK PVSLIAPAFN LSANSRRKAM ELFLRGGEGN QILYEMEQVP  180
SEKKEGADKK EYPVDISLPD INNGVYGTDD FRMYSFKVKL CSRAYSHDWT ECPFVHPGEN  240
ARRRDPQKYP YSCVPCPEFR KGTCQKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCNRK  300
VCFFAHKPEE LRPVYASTGS AMPSPKSYSA GAFDMTSMSP LSLSSSLPMP TVSTPPMSPL  360
AASSSAKSGN LWQNKINFTP PSLQLPGSRL KAALSARDLD LEMEMLGIGS PSYARQQQQQ  420
QQQQQQQLVD EITRISSPSF RSRMGDLNPT NLDELLASAD ASILSQLHGL SVQPSTPTQL  480
QTQNSLQMRQ NMNHLRASYP SNNMPSSPVY KSSPYGFDSS AAVAAAMMNS RSAAFAKRSQ  540
SFIDRGAATN HPGMSSPSNP SCRVSSALSD WGSPTGKLDW GVNGDELSKL RKSASFGFRN  600
NGVSSPKAQT EHVEPDVSWV HSLVRDERSE RFGAEKQHQH QHQQYDLSKE ILPPWVEQLY  660
IEQQKQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW16195