PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW13332

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 268aa MW: 28427.3 Da PI: 8.8713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW13332	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	11	34	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H OIW13332 11 KSKPCTKFFSTAGCPFGESCHFLH 34 7789******************** PP
2	zf-CCCH	22	2.9e-07	76	101	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k + C+ f Ck+Gd+C++aHg+ OIW13332 76 KSRMCNKFNTAEGCKFGDKCHYAHGE 101 5688********************96 PP
3	zf-CCCH	33.7	5.9e-11	238	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f + G C +G+rC+FaHg OIW13332 238 FKTKLCDNFTK-GSCTFGERCHFAHG 262 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MDSISTGVGS KSKPCTKFFS TAGCPFGESC HFLHYVPGGY NAVAHLMHIT PATPTPSRNV 60 SATPPIPNGS AQPTVKSRMC NKFNTAEGCK FGDKCHYAHG EWELGRPFAP SFDDHRAMGP 120 PSASRMPSRM DPPPPGLAAS FGANATAKIS VEASLAGAII GKGGVNSKQI CRQTGAKLSI 180 RDHESDPNLR NIELEGSFEQ IKEASNMVKE LLFTLQMSAP PKSIPGVPGG HAPPGSNFKT 240 KLCDNFTKGS CTFGERCHFA HGAAELRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-79	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW13332