PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW11767

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 719aa MW: 77426.6 Da PI: 6.1457

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW11767	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	301	321	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OIW11767 301 PCPDFRK-GACRRGDMCEYAHG 321 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MCGGPEKSKS ASSSAAEGST NVEEMKNLTV HTEESFSSLL ELASNNDFED FKLVLDKDAS 60 LINEVGLWYV CRIGSKQVVL ERRTPLMVAA TYGCMDVVKL ILSYPEADVN FSCGADKSTA 120 LHCAASGGSV DAVSVVKLLI SAGADICCVD ANGNRPIDVI VVPFKLQGMK AILVELLSDS 180 ASDGSVDDCF IPPSVGSSSP GSTAHLSSLE YGLPSSPSGS PPSPVASKFI DTPEKKEYPT 240 DPSLPDIKDS IYATDEFRIF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV 300 PCPDFRKGAC RRGDMCEYAH GVFESWLHPA QYRTRLCKDG TSCNRRVCFF AHAVEELRPL 360 YGSTGSAGHS PRSPASAPNV MDMAAAMSLF PGSPSSMSSM SPSPFAQPMF PSANGISNSS 420 AGGWPQPNVP ALHLPGSNLQ SSRLRSSFNA RDMPQENLNM LPDFNGQQHL FNDLSCFSQH 480 HPGVGSVSRP SWAKTLTPSN LDELFCSDIS SSPRYSDPAA ASVFSPTHKS AVFNHFQQLQ 540 STLAPINTNP LSPKNVEHHL SQASFGVSSP GRMSPRSMES ISPMSSRYSA FAHREKPQQQ 600 LWSPSSRDLG VNSSASVVGS PVNSWSKWGS PNGKADWSVN GNELGPTFEH GNNGEGPDLS 660 WVQSLVKESP PEMIKENFAG SGPIASAADG LKTNPQIESI DHSVVGAWLE QVQLDQFVV

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MCGGPEKSKS ASSSAAEGST NVEEMKNLTV HTEESFSSLL ELASNNDFED FKLVLDKDAS  60
LINEVGLWYV CRIGSKQVVL ERRTPLMVAA TYGCMDVVKL ILSYPEADVN FSCGADKSTA  120
LHCAASGGSV DAVSVVKLLI SAGADICCVD ANGNRPIDVI VVPFKLQGMK AILVELLSDS  180
ASDGSVDDCF IPPSVGSSSP GSTAHLSSLE YGLPSSPSGS PPSPVASKFI DTPEKKEYPT  240
DPSLPDIKDS IYATDEFRIF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV  300
PCPDFRKGAC RRGDMCEYAH GVFESWLHPA QYRTRLCKDG TSCNRRVCFF AHAVEELRPL  360
YGSTGSAGHS PRSPASAPNV MDMAAAMSLF PGSPSSMSSM SPSPFAQPMF PSANGISNSS  420
AGGWPQPNVP ALHLPGSNLQ SSRLRSSFNA RDMPQENLNM LPDFNGQQHL FNDLSCFSQH  480
HPGVGSVSRP SWAKTLTPSN LDELFCSDIS SSPRYSDPAA ASVFSPTHKS AVFNHFQQLQ  540
STLAPINTNP LSPKNVEHHL SQASFGVSSP GRMSPRSMES ISPMSSRYSA FAHREKPQQQ  600
LWSPSSRDLG VNSSASVVGS PVNSWSKWGS PNGKADWSVN GNELGPTFEH GNNGEGPDLS  660
WVQSLVKESP PEMIKENFAG SGPIASAADG LKTNPQIESI DHSVVGAWLE QVQLDQFVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW11767