PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW10671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 253aa MW: 27480.2 Da PI: 7.3728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.2e-10 | 73 | 97 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ OIW10671 73 FKTKLCCKFRA-GTCPYVTNCNFAHS 97 69*********.*************8 PP | |||||||
2 | zf-CCCH | 20.2 | 1.1e-06 | 143 | 168 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F+H+ OIW10671 143 YKGRHCKKFYTEEGCPYGDSCTFMHD 168 78888********************7 PP | |||||||
3 | zf-CCCH | 42.4 | 1.1e-13 | 219 | 244 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIW10671 219 WKTRICNKWELTGYCPFGNKCHFAHG 244 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MDQTRDSNVV QIITGDENWS SSGDQSVWAT EDDYRFFNNS NDAESTPKRS RNSQDATASS 60 SNNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE LRRPPMNWQE IVAAHEEEKS 120 VPAREEFQIP SLSGYSGETQ RSYKGRHCKK FYTEEGCPYG DSCTFMHDEN SRNRESVAIS 180 LGPGGYGGGG GSGAGVGGGA GSGGGGGGSG SLNLKPSNWK TRICNKWELT GYCPFGNKCH 240 FAHGAAVVMH CEM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 5e-93 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW10671 |