PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW10670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36689.2 Da PI: 6.7787 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4.1e-10 | 75 | 99 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ OIW10670 75 FKTKLCCKFRT-GTCPYVTNCNFAHS 99 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3e-06 | 145 | 170 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OIW10670 145 YKGRHCKKFYTEEGCPYGDSCTFLHD 170 78888********************7 PP | |||||||
3 | zf-CCCH | 43 | 7.5e-14 | 218 | 243 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIW10670 218 WKTRICNKWEMTGYCPFGNKCHFAHG 243 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MDHTRDSNVV QIITGGENWS SSVSGDQSVW ATEDDYRFFN TNNDADSTPK RSRNSQEATP 60 SSSNNRSKAI GKMFFKTKLC CKFRTGTCPY VTNCNFAHSI EELRRPPPNW QEIVAAHEEE 120 KPVPPVEEFQ IPSLSGYSGE VQRSYKGRHC KKFYTEEGCP YGDSCTFLHD ENSRNRESVA 180 ISLGPGGYGG GSGGGDGGGA GSSGGGGGGS SNLKPSNWKT RICNKWEMTG YCPFGNKCHF 240 AHGATELSTH GEFVEGENGD TTFAGTPDTK HGGLPSKTPA DSVVASVIPV AHSDVYHIGV 300 PSQRPSVVIQ RPGQRAHQKW KGPDKISRIY GDWIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-113 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW10670 |