PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIW10670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 338aa    MW: 36689.2 Da    PI: 6.7787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIW10670genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-107599126
              --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
              +kt+lC+ f+  GtC+y  +C+FaH+
  OIW10670 75 FKTKLCCKFRT-GTCPYVTNCNFAHS 99
              69*********.*************8 PP

2zf-CCCH18.73e-06145170126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               yk + C+ f+    C+yGd+C+F H+
  OIW10670 145 YKGRHCKKFYTEEGCPYGDSCTFLHD 170
               78888********************7 PP

3zf-CCCH437.5e-14218243126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt++C+ +  tG+C++G++C+FaHg
  OIW10670 218 WKTRICNKWEMTGYCPFGNKCHFAHG 243
               8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDHTRDSNVV QIITGGENWS SSVSGDQSVW ATEDDYRFFN TNNDADSTPK RSRNSQEATP  60
SSSNNRSKAI GKMFFKTKLC CKFRTGTCPY VTNCNFAHSI EELRRPPPNW QEIVAAHEEE  120
KPVPPVEEFQ IPSLSGYSGE VQRSYKGRHC KKFYTEEGCP YGDSCTFLHD ENSRNRESVA  180
ISLGPGGYGG GSGGGDGGGA GSSGGGGGGS SNLKPSNWKT RICNKWEMTG YCPFGNKCHF  240
AHGATELSTH GEFVEGENGD TTFAGTPDTK HGGLPSKTPA DSVVASVIPV AHSDVYHIGV  300
PSQRPSVVIQ RPGQRAHQKW KGPDKISRIY GDWIDDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-113C3H family protein