PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW10309 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | LSD | ||||||||
Protein Properties | Length: 142aa MW: 14735.1 Da PI: 7.9529 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.1 | 6e-13 | 25 | 49 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV Ca+C++V OIW10309 25 CSGCRNLLLYPVGATSVYCAVCNAV 49 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.7e-15 | 64 | 88 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OIW10309 64 CGGCHTLLMYIRGATSVQCSCCHTV 88 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 102 | 126 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V OIW10309 102 CGNCRMLLMYQYGARSVKCAVCNFV 126 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence |
MPVPLAPYPT PPAPAANGAQ SQLVCSGCRN LLLYPVGATS VYCAVCNAVT AVPPPGTEMA 60 QLVCGGCHTL LMYIRGATSV QCSCCHTVNL ALEANQVAHV NCGNCRMLLM YQYGARSVKC 120 AVCNFVTSVG ASGSTNEQKF ST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-79 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW10309 |