PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW09953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38489.4 Da PI: 7.1939 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.7e-08 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C FaHg OIW09953 129 ACPDFRK-GGCKKGDACEFAHG 149 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MMLGEEPHPT VHVPHVPPWP FFDDDIFSSL SVNGDVSAVN NAGEYSPCYL HEALLALQRY 60 LPSNDDGDGD SELDSPVDAF SGDYFRMFEF KIRKCARGRS HDWTECPYAH PGEKARRRDP 120 RKFHYSGTAC PDFRKGGCKK GDACEFAHGV FECWLHPARY RTQPCKDGVS CRRRVCFFAH 180 MPEQLRVLPQ QSPRSTDSYD GSPLRTKTLQ LFPSTESNSP PAMNSPSESP PISPMTKSMF 240 SSLRNLQLDK MKSLPSSWNI PIGSPRFGSP RGPVIRPGFC SLPSTPTTQP PVRAGFNCFE 300 AWDSSCCEEE PVMERVESGR DIRAKMFEKL SKENSLAKLD LAP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-115 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW09953 |