PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIW08106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 398aa MW: 43481 Da PI: 7.8838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 115 | 139 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ OIW08106 115 GEKDCAHYMLTRTCKFGESCKFDHP 139 7889********************8 PP | |||||||
2 | zf-CCCH | 33.2 | 9.1e-11 | 165 | 191 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G+rCkF+H++ OIW08106 165 PGEPDCPYFVKTQRCKFGPRCKFNHPK 191 5789*********************96 PP | |||||||
3 | zf-CCCH | 40.1 | 6.3e-13 | 214 | 237 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ OIW08106 214 EVDCPFYMKTGSCKYGSSCRYNHP 237 689********************9 PP | |||||||
4 | zf-CCCH | 42.3 | 1.2e-13 | 300 | 323 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+G+rCkF+H+ OIW08106 300 QIECDYYMKTGICKFGERCKFHHP 323 568********************8 PP | |||||||
5 | zf-CCCH | 41.6 | 2e-13 | 348 | 371 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCkyG++CkF H+p OIW08106 348 VICPYYLKTGTCKYGPTCKFDHPP 371 68********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence |
MFFSRHLTDT TSAAASATSF RFPSSASSDV DIAPPGVPSR IPSSTSHLFS QPSPWFSSPS 60 LDLKRSSSQA LYHPTILGIQ NTIGQNEAWY STSPLAKRPR YESGSNLPIY PQRPGEKDCA 120 HYMLTRTCKF GESCKFDHPI WVPEGGIPDW KEVPDVTNET LPERPGEPDC PYFVKTQRCK 180 FGPRCKFNHP KVSSESAGVS DLPDRPSEPP CAGEVDCPFY MKTGSCKYGS SCRYNHPDRT 240 AINPPVAALG PSVLASSAAN LNIGLINPAA PVYQAFDPRL SNPMSQLGMA ETTYPQRPGQ 300 IECDYYMKTG ICKFGERCKF HHPIDRSAPS QQTVKLTPAG LPRREGAVIC PYYLKTGTCK 360 YGPTCKFDHP PPGEVLEMAK SQTNGGDAKD NENVSASA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-145 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIW08106 |