PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIW07995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 468aa    MW: 50515.1 Da    PI: 7.5336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIW07995genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.3e-09109129526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C+++ + G C++G+rCkF H+
  OIW07995 109 ICNYWVQ-GNCSFGERCKFLHS 129
               8******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MDLDGGNKRV FNRLGGPAGD PRSQKVCYHW QAGKCNRHPC AFLHSELPPH NSNGGPSKRP  60
YGSAENLSFN GPPRRTSNFN TWGRGGGGRG GGGGRGGGRG GEVKKADKIC NYWVQGNCSF  120
GERCKFLHSW SLGDGFSLLT QLEGHKNVVS GIAFPSGSNK LYTGSTDETV RVWDCQSGQC  180
TAVINLGGEV GCMISEGPWV FVGIPNFVKV WNTENLIELS LSGPVGQVYA LVVINDMLFA  240
GTQDGSILIW KFNLTTNGFE PAASLKGHTH GVVSLVVGAN RLYSGSMDNT IRVWNLETLQ  300
CLQTLTEHTS VVMSVLCWDQ FLLSCSLDKT VKVWFATESG NLEVTYTHNE EHGYDTLVGE  360
RGGLLSGGQR QRIAIARALL KNAPILILDE ATSALDATSE RLVQDALNHL MKGRTTLVIA  420
HRLSTVQNAH QIALVSDGGI AEIGTHLELV AKEGQYASLV STQRLAFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18495RGGGGRGGGGGR
28594GGGGRGGGGG
38695GGGGRGGGGG
48796GGGGRGGGGG
589100RGGGGRGGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-150C3H family protein