PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW06858

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 301aa MW: 31814.7 Da PI: 9.8712

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW06858	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	104	129	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + G Ck+Gd+C+FaHg+ OIW06858 104 KNRLCSKYNSAGGCKFGDKCHFAHGE 129 569*********************96 PP
2	zf-CCCH	34.4	3.8e-11	268	293	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +fa+ G C +GdrC+FaHgp OIW06858 268 FKTKMCENFAK-GNCTFGDRCHFAHGP 293 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MDRKRGIHAP SSAFNANGSA KKPRQEMESF TTGIGSKSKP CTKFFSTSGC PFGEGCHFLH 60 YVPGGFKAVS QVMNVGSSPA IQQGGRNQTA PPSFPDGSSP PAVKNRLCSK YNSAGGCKFG 120 DKCHFAHGEW ELGKPTAPSY EDPRGFGQMQ SNRIGGRSDP PHPSHGAAAG FGASATAKIS 180 INASLAGAVI GKNGVNSKQI CRITGAKLSI RDHDSDPNLR NIELEGSFDQ IKQASGMVHE 240 LILNVSSSAA GPPMKNFTSQ SHSPANNFKT KMCENFAKGN CTFGDRCHFA HGPNELRKSG 300 I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW06858