PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW05931

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 452aa MW: 51214.7 Da PI: 6.3921

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW05931	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +++ G C++ ++C+FaHg OIW05931 7 FKTRLCVLYQK-GRCNR-NNCSFAHG 30 69*******.*.*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MVERKQFKTR LCVLYQKGRC NRNNCSFAHG NVELRRFSAS SSEGEPQLIV RLPLSDQEVT 60 GSNLENILSA CKGRREYSGN DLRDKLDRRH LSPPRRYSPA RDGRGGQATH GYSPSRSSEK 120 KSDRRHIRKQ GTTGQHDNPG SLNFSDRIQD QVRGKLFTSG SRNTLDEQLK KVESDINTLQ 180 NQKFQLEVYL DESVQEVDSL NSTIQELDAQ LCKEKEECRR SQVRLQRFGD ELVSDISRIG 240 ASEEDLSIDI VSNGENPALP LAIKHNVDQN DASPHRKRLH VKQDAVEELK QDRSKIGNLV 300 GTSRTRKRSR WNLPAQLNDK DEENIDVPPN TGTEVTRTVN YEGKHKRGIC NSSNNLISEK 360 FKESRIEVPP TSMAAHVIDE EIEIELNDRT DITETVKTQN ENGVAHEAKS LLLMLRPPLI 420 PRTNYSRYEG DDENVDVDGL DEEDAGAHVD IV

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MVERKQFKTR LCVLYQKGRC NRNNCSFAHG NVELRRFSAS SSEGEPQLIV RLPLSDQEVT  60
GSNLENILSA CKGRREYSGN DLRDKLDRRH LSPPRRYSPA RDGRGGQATH GYSPSRSSEK  120
KSDRRHIRKQ GTTGQHDNPG SLNFSDRIQD QVRGKLFTSG SRNTLDEQLK KVESDINTLQ  180
NQKFQLEVYL DESVQEVDSL NSTIQELDAQ LCKEKEECRR SQVRLQRFGD ELVSDISRIG  240
ASEEDLSIDI VSNGENPALP LAIKHNVDQN DASPHRKRLH VKQDAVEELK QDRSKIGNLV  300
GTSRTRKRSR WNLPAQLNDK DEENIDVPPN TGTEVTRTVN YEGKHKRGIC NSSNNLISEK  360
FKESRIEVPP TSMAAHVIDE EIEIELNDRT DITETVKTQN ENGVAHEAKS LLLMLRPPLI  420
PRTNYSRYEG DDENVDVDGL DEEDAGAHVD IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	3e-38	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW05931