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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIW05175 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 329aa MW: 36160.1 Da PI: 9.6653 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 96.4 | 3.2e-30 | 159 | 215 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d p+YVNaKQy++I++RRq+Rak+ ++k +k rkpy+heSRh+hA+rRpRg+gGrF
OIW05175 159 DGPIYVNAKQYHGIIRRRQSRAKAVLDNKS-IKRRKPYMHESRHRHAMRRPRGCGGRF 215
57***************************9.**************************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 329 aa Download sequence |
MQSVYLKGHE GIHHNSIGQF SHANSAPWWS SFASESAYGA ESYGQMKPFS LEFANYEDHL 60 NDTKKSARGA EQVFGKGYTT QFTIFSDIFK MSGGAQKPQA TTSLQSSLTD TNTHFELGFT 120 QPMISAKYPY ADQFYGLFST YVPQISGRIM LPLNMASDDG PIYVNAKQYH GIIRRRQSRA 180 KAVLDNKSIK RRKPYMHESR HRHAMRRPRG CGGRFLNTRN YANGNGKSGN EVNKSSGQQL 240 HSSGSQGSEI LQSEVGTLNS SKETNGNSPN ISGSEVTSMY SHGGLDSFTF NHIGSEAVHS 300 LADIIDGGRG IITPTKWVAA GGNCYNLNI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 174 | 193 | RRRQSRAKAVLDNKSIKRRK |
| 2 | 174 | 194 | RRRQSRAKAVLDNKSIKRRKP |
| 3 | 175 | 195 | RRRQSRAKAVLDNKSIKRRKP |
| 4 | 200 | 209 | RHRHAMRRPR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G05690.1 | 6e-53 | NF-YA family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIW05175 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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