PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW04135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 421aa MW: 45881.6 Da PI: 7.8765 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG+ C+++H+ OIW04135 55 PGEPDCLYFLRTGMCGYGSACRYNHP 80 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.2 | 5.1e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ OIW04135 99 QPDCEYFLKTGTCKYGSTCKYHHPR 123 789********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 144 | 168 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G CkF+H++ OIW04135 144 ERSCPYYMRTGSCKFGVACKFHHPQ 168 577********************97 PP | |||||||
4 | zf-CCCH | 37.1 | 5.2e-12 | 276 | 302 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tGtCkyG+ Ck++H++ OIW04135 276 PGQPECRYFMSTGTCKYGSDCKYHHPK 302 5789*********************96 PP | |||||||
5 | zf-CCCH | 24.5 | 4.6e-08 | 320 | 344 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++ G Ck+G++CkF H+ OIW04135 320 GHAICSYYRLCGVCKFGPTCKFDHP 344 789*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence |
MSENRHPLRN AVSNHSGDNI EGGVDFYGEA VLRLNINDNQ DRDAAAQSIP FPERPGEPDC 60 LYFLRTGMCG YGSACRYNHP ANVSLGIHYG EELPERVGQP DCEYFLKTGT CKYGSTCKYH 120 HPRDRRGAAP VSFNSLGLPM RQEERSCPYY MRTGSCKFGV ACKFHHPQIG ASPVAGSPTS 180 TILPTSGLPY VGGFSAWQLP RMSYLSGQGI QSYVPPFLSS PQGIIPAQNW NTYMGSMSGA 240 ITTGFVGSNF VYDTMNLGEP LLCGGQMISP VLPERPGQPE CRYFMSTGTC KYGSDCKYHH 300 PKERTAQSLM NPVGLPLRPG HAICSYYRLC GVCKFGPTCK FDHPILAIPQ SYGLTSSHAF 360 SVPDTSFINS SRVLSTVQPP NTSISNLSNG KVQHSDTKTT EDSSKQVDST TPDSFPATSK 420 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW04135 |