PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW02758

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 411aa MW: 45335.8 Da PI: 7.2678

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW02758	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ OIW02758 48 PGEPDCLYYLRTGMCGYGSNCRYNHP 73 5789*********************8 PP
2	zf-CCCH	37.2	4.9e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ OIW02758 92 QPDCEYFLKTGTCKYGSTCKYHHPR 116 789********************96 PP
3	zf-CCCH	40.6	4.3e-13	137	161	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG Ck+G CkF+H++ OIW02758 137 EKPCPYYMRTGSCKFGVACKFHHPQ 161 689********************97 PP
4	zf-CCCH	37.9	3e-12	268	293	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ OIW02758 268 DQPECRYFMSTGTCKYGSDCKYHHPK 293 689*********************96 PP
5	zf-CCCH	33.2	8.9e-11	310	335	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ OIW02758 310 PGHAICSYYRLYGICKFGPTCKFDHP 335 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MPENIHPLRN SASNHSGDNI EEAIQRLKIN ENRDRDGAAQ SSPFPERPGE PDCLYYLRTG 60 MCGYGSNCRY NHPANVSPGT HYGEELPERI GQPDCEYFLK TGTCKYGSTC KYHHPRYRQG 120 AAPVSFNSLG LPVRQEEKPC PYYMRTGSCK FGVACKFHHP QIGASPVAGS PTSTFLPTSG 180 LPYVDGFSAW QLPRMSYLYG QGIQSYVPPF LSSPQGIIPA QNWNTYMGSM SSAMPTFLGS 240 NFLYDTMNLG ESLLGGQVIN PTLPERPDQP ECRYFMSTGT CKYGSDCKYH HPKERITQSL 300 MNPLGLPVRP GHAICSYYRL YGICKFGPTC KFDHPVLAIP QNYDLTSSAF PALDTSLISS 360 PTSFSTVQPT ESSPSKLSTD KVQHSDTKAI EDSSKQADTT TPDSFPTTSQ S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MPENIHPLRN SASNHSGDNI EEAIQRLKIN ENRDRDGAAQ SSPFPERPGE PDCLYYLRTG  60
MCGYGSNCRY NHPANVSPGT HYGEELPERI GQPDCEYFLK TGTCKYGSTC KYHHPRYRQG  120
AAPVSFNSLG LPVRQEEKPC PYYMRTGSCK FGVACKFHHP QIGASPVAGS PTSTFLPTSG  180
LPYVDGFSAW QLPRMSYLYG QGIQSYVPPF LSSPQGIIPA QNWNTYMGSM SSAMPTFLGS  240
NFLYDTMNLG ESLLGGQVIN PTLPERPDQP ECRYFMSTGT CKYGSDCKYH HPKERITQSL  300
MNPLGLPVRP GHAICSYYRL YGICKFGPTC KFDHPVLAIP QNYDLTSSAF PALDTSLISS  360
PTSFSTVQPT ESSPSKLSTD KVQHSDTKAI EDSSKQADTT TPDSFPTTSQ S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-117	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW02758