PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW02577

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 702aa MW: 77472 Da PI: 5.8168

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW02577	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+ G C+ Gd C +aHg OIW02577 279 PCPEFRM-GSCSKGDACEYAHG 299 89*99.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MCSGTNSKTS EFGLVMEDEY GRQEELHHKI SALLEFSAAD DLVGFKDVVE KEDHDIDGVG 60 LWYGRRVGSN KVGYEARTPL MIASMFGSQG VLTYILRTGR VDVNRVTGSD GATALHCAVA 120 GDSPASLEVV KLLLDASADV NAVDANGNRP RDLIVSVANS IFNSRKRILQ ALLEGAYGTD 180 QACLTFEEIV GQIEEQQRQD ANTPRASKDE TEKKGYPVDL SLPDIKNGMY STDEFRMYTF 240 KVKPCSRAYP HDWTECPFVH PGENARRRDP RKYPYSCVPC PEFRMGSCSK GDACEYAHGI 300 FECWLHPAQY RTRLCKDESA CTRRVCFFAH KLEELRPLYA STGSAIPSLR SYSSTTSLEM 360 GSVRPIALSS PSVITPPSST PPLSPCGASS PIVGAMWQTQ HNVAAPTLQL PKSRLKTALT 420 ARDINLDIKL IEVENHRVRQ QLMMDEISSL SAPSNWKNSM PNSPSFPVSF GDHAGQLNRL 480 SEVKPTNLDD IFGSIDPPIL PKFHGMSLDG AGSPLQSPTG IQMHQNVTQQ PQCYSNVIGS 540 PPFRGDQSGA VASVSMNPRT AASSKWSRSF IECSVVNRHS EFPSPFTPEA AKHTFSDWGS 600 PDGKLDWAIN GEGLNKLRKY ASFGFQSSIT PLTIATTTLA ENIDEPDVSW VHSLVKDDPL 660 LESDQFSAED QQQQLQYHLH NGRNAVPTWF EQMYMEQEQI VA

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MCSGTNSKTS EFGLVMEDEY GRQEELHHKI SALLEFSAAD DLVGFKDVVE KEDHDIDGVG  60
LWYGRRVGSN KVGYEARTPL MIASMFGSQG VLTYILRTGR VDVNRVTGSD GATALHCAVA  120
GDSPASLEVV KLLLDASADV NAVDANGNRP RDLIVSVANS IFNSRKRILQ ALLEGAYGTD  180
QACLTFEEIV GQIEEQQRQD ANTPRASKDE TEKKGYPVDL SLPDIKNGMY STDEFRMYTF  240
KVKPCSRAYP HDWTECPFVH PGENARRRDP RKYPYSCVPC PEFRMGSCSK GDACEYAHGI  300
FECWLHPAQY RTRLCKDESA CTRRVCFFAH KLEELRPLYA STGSAIPSLR SYSSTTSLEM  360
GSVRPIALSS PSVITPPSST PPLSPCGASS PIVGAMWQTQ HNVAAPTLQL PKSRLKTALT  420
ARDINLDIKL IEVENHRVRQ QLMMDEISSL SAPSNWKNSM PNSPSFPVSF GDHAGQLNRL  480
SEVKPTNLDD IFGSIDPPIL PKFHGMSLDG AGSPLQSPTG IQMHQNVTQQ PQCYSNVIGS  540
PPFRGDQSGA VASVSMNPRT AASSKWSRSF IECSVVNRHS EFPSPFTPEA AKHTFSDWGS  600
PDGKLDWAIN GEGLNKLRKY ASFGFQSSIT PLTIATTTLA ENIDEPDVSW VHSLVKDDPL  660
LESDQFSAED QQQQLQYHLH NGRNAVPTWF EQMYMEQEQI VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW02577