PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW02540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25857.9 Da PI: 9.382 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr gi+KKA+ELSvLCda+v +++fs tgklyey+s OIW02540 9 KKIDNLTARQVTFSKRRRGIFKKAQELSVLCDAKVGLLVFSATGKLYEYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 48.7 | 3.3e-17 | 93 | 170 | 21 | 98 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +a L ke+ + +R+++Ged e L+l eLqqLe++Le +lk++ ++K++l++++i lqk+ +l++e ++L++k+ OIW02540 93 HAELSKEVADKTQLLRRMKGEDFEGLNLDELQQLEKRLEAGLKRVIKTKEKLITDEIVALQKRGMKLEDESRQLKQKM 170 455666666666678*************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MVRQKIKIKK IDNLTARQVT FSKRRRGIFK KAQELSVLCD AKVGLLVFSA TGKLYEYASS 60 SMKDVLTRYN QHFHDINQRE RPLELQLENS INHAELSKEV ADKTQLLRRM KGEDFEGLNL 120 DELQQLEKRL EAGLKRVIKT KEKLITDEIV ALQKRGMKLE DESRQLKQKM SMMYKGKSPS 180 MVDKDIAIQE AVSLDSMNNV CSCNSCPSLD DDSSDISLKL GLSFPD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW02540 |