PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW00711

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 700aa MW: 78746 Da PI: 5.4554

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW00711	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	120	142	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp OIW00711 120 VPCIFFQK-GLCLKGDRCAFLHGP 142 59****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MVPQQSQPQS QSSAPSAQDE ALKRNTDCVY FLASPLTCKK GNECEYRHSE YARVNPRDCW 60 YWLNGNCLNP KCSFRHPPLD GLIGTPPATS SGPSLPSVPL LQHPTPSATH APYSSSKPAV 120 PCIFFQKGLC LKGDRCAFLH GPIPNTGNKV VTQAPMNSQG TEAQNFKKPF GGIEKNTQER 180 KFSHGNVTKP VGGLEVKPFQ KVETAPQKKF FELKKHVPPP SAGFEEEASI FNVTSTPPVI 240 NDPTVVRSSR LHQAYVPDDN SFHNGKDSDE FLRESSPGFD VLVDDELRNS DYYHGEDDFG 300 NTRGQDERNL DSLNEYDLGH SADYSLAADI ERDRFRVPQG YDSYDHTQET YMWEQHRKPS 360 AHLERRPHRR SDSPNNAEVS DLRLHISKRR KGNGLKSVVA HDYALESRDE ERSQRHFPRM 420 DSLQLPSNES SISNRFRGRI NLPVNGGDVN QERESDRGRI GSRLSSGRLP APHQGRFQDR 480 IRGRVQHGER GNFRQSLQGR ELMGDRTNDF YAPKRLSELK NGRNSENREQ LFLGKRKGLR 540 DHQQSDDDFQ FDGPKPLSEI LKEKKRGVGA GAASQSGNSS ENKNIEITNN SDHTSLASTQ 600 NGALFETVEN VKNHEEVSKA EVTDASHGQS SVEGLIYDEA AEDQKYEGDD QIDGEYDYDQ 660 VDEGDYEYEQ VDEGENPEQE YMDEEEDGDD FAKKIGVVLT

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MVPQQSQPQS QSSAPSAQDE ALKRNTDCVY FLASPLTCKK GNECEYRHSE YARVNPRDCW  60
YWLNGNCLNP KCSFRHPPLD GLIGTPPATS SGPSLPSVPL LQHPTPSATH APYSSSKPAV  120
PCIFFQKGLC LKGDRCAFLH GPIPNTGNKV VTQAPMNSQG TEAQNFKKPF GGIEKNTQER  180
KFSHGNVTKP VGGLEVKPFQ KVETAPQKKF FELKKHVPPP SAGFEEEASI FNVTSTPPVI  240
NDPTVVRSSR LHQAYVPDDN SFHNGKDSDE FLRESSPGFD VLVDDELRNS DYYHGEDDFG  300
NTRGQDERNL DSLNEYDLGH SADYSLAADI ERDRFRVPQG YDSYDHTQET YMWEQHRKPS  360
AHLERRPHRR SDSPNNAEVS DLRLHISKRR KGNGLKSVVA HDYALESRDE ERSQRHFPRM  420
DSLQLPSNES SISNRFRGRI NLPVNGGDVN QERESDRGRI GSRLSSGRLP APHQGRFQDR  480
IRGRVQHGER GNFRQSLQGR ELMGDRTNDF YAPKRLSELK NGRNSENREQ LFLGKRKGLR  540
DHQQSDDDFQ FDGPKPLSEI LKEKKRGVGA GAASQSGNSS ENKNIEITNN SDHTSLASTQ  600
NGALFETVEN VKNHEEVSKA EVTDASHGQS SVEGLIYDEA AEDQKYEGDD QIDGEYDYDQ  660
VDEGDYEYEQ VDEGENPEQE YMDEEEDGDD FAKKIGVVLT

Link Out ? help Back to Top
Ensembl	OIW00711